Hb_164577_010

Information

Type -
Description -
Location Contig164577: 3419-4198
Sequence    

Annotation

kegg
ID pop:POPTR_0017s01630g
description hypothetical protein
nr
ID KDP43125.1
description hypothetical protein JCGZ_26658 [Jatropha curcas]
swissprot
ID Q7XBQ9
description Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1
trembl
ID A0A067LF36
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26658 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15131: 2392-4314 , PASA_asmbl_15132: 2392-4314
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_164577_010 0.0 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
2 Hb_046610_010 0.0714210836 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_000997_130 0.0817818342 - - DNA binding protein, putative [Ricinus communis]
4 Hb_007546_010 0.0936125743 - - unnamed protein product [Vitis vinifera]
5 Hb_008637_020 0.0936681494 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002289_180 0.106518824 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 [Nelumbo nucifera]
7 Hb_000819_020 0.1130504132 - - hypothetical protein PRUPE_ppa020290mg, partial [Prunus persica]
8 Hb_054165_010 0.1153215994 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
9 Hb_002133_010 0.1179012394 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
10 Hb_001002_020 0.1285350991 - - ATP binding protein, putative [Ricinus communis]
11 Hb_001511_200 0.1286198662 - - Embryonic abundant protein, putative [Ricinus communis]
12 Hb_128851_020 0.1319832946 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_012400_020 0.1332558647 - - Spotted leaf protein, putative [Ricinus communis]
14 Hb_064885_010 0.1333072118 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
15 Hb_000164_160 0.1334961179 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
16 Hb_000592_070 0.1419008005 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
17 Hb_099188_010 0.1428371749 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
18 Hb_000668_220 0.144104072 - - PREDICTED: uncharacterized protein LOC105119281 [Populus euphratica]
19 Hb_112703_010 0.1444276494 - - PREDICTED: cytochrome P450 CYP72A219-like [Prunus mume]
20 Hb_173029_010 0.144973764 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_164577_010 Hb_164577_010 Hb_046610_010 Hb_046610_010 Hb_164577_010--Hb_046610_010 Hb_000997_130 Hb_000997_130 Hb_164577_010--Hb_000997_130 Hb_007546_010 Hb_007546_010 Hb_164577_010--Hb_007546_010 Hb_008637_020 Hb_008637_020 Hb_164577_010--Hb_008637_020 Hb_002289_180 Hb_002289_180 Hb_164577_010--Hb_002289_180 Hb_000819_020 Hb_000819_020 Hb_164577_010--Hb_000819_020 Hb_054165_010 Hb_054165_010 Hb_046610_010--Hb_054165_010 Hb_046610_010--Hb_000997_130 Hb_001002_020 Hb_001002_020 Hb_046610_010--Hb_001002_020 Hb_046610_010--Hb_007546_010 Hb_021142_030 Hb_021142_030 Hb_046610_010--Hb_021142_030 Hb_000997_130--Hb_002289_180 Hb_000997_130--Hb_007546_010 Hb_000164_160 Hb_000164_160 Hb_000997_130--Hb_000164_160 Hb_010223_010 Hb_010223_010 Hb_000997_130--Hb_010223_010 Hb_002066_050 Hb_002066_050 Hb_007546_010--Hb_002066_050 Hb_001511_200 Hb_001511_200 Hb_007546_010--Hb_001511_200 Hb_007546_010--Hb_008637_020 Hb_128851_020 Hb_128851_020 Hb_008637_020--Hb_128851_020 Hb_099188_010 Hb_099188_010 Hb_008637_020--Hb_099188_010 Hb_008637_020--Hb_002289_180 Hb_002542_030 Hb_002542_030 Hb_008637_020--Hb_002542_030 Hb_008637_020--Hb_001511_200 Hb_112703_010 Hb_112703_010 Hb_002289_180--Hb_112703_010 Hb_032071_010 Hb_032071_010 Hb_002289_180--Hb_032071_010 Hb_008651_010 Hb_008651_010 Hb_002289_180--Hb_008651_010 Hb_002289_180--Hb_099188_010 Hb_000819_020--Hb_008637_020 Hb_000819_020--Hb_002289_180 Hb_000819_020--Hb_000164_160 Hb_000819_020--Hb_099188_010 Hb_000819_020--Hb_000997_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.774445 44.8461 49.9197 24.0395 0 0.10125
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0698018 0 0 0 0

CAGE analysis