Hb_032202_050

Information

Type transcription factor
Description TF Family: TCP
Location Contig32202: 44714-45799
Sequence    

Annotation

kegg
ID rcu:RCOM_1613050
description hypothetical protein
nr
ID XP_002511775.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O64647
description Transcription factor TCP9 OS=Arabidopsis thaliana GN=TCP9 PE=2 SV=1
trembl
ID B9RDI6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1613050 PE=4 SV=1
Gene Ontology
ID GO:0044699
description transcription factor tcp9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 010_C19.ab1: 45231-45962

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032202_050 0.0 transcription factor TF Family: TCP conserved hypothetical protein [Ricinus communis]
2 Hb_005394_010 0.1149216148 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
3 Hb_005496_160 0.127407826 - - PREDICTED: calcium-transporting ATPase 1, chloroplastic [Jatropha curcas]
4 Hb_033930_010 0.1286726553 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
5 Hb_011671_110 0.1331934988 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
6 Hb_002609_190 0.1362771976 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
7 Hb_003216_050 0.1372894993 - - PREDICTED: OBERON-like protein [Jatropha curcas]
8 Hb_000649_300 0.1383728033 transcription factor TF Family: Tify JAZ9 [Hevea brasiliensis]
9 Hb_002073_020 0.1387914567 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
10 Hb_047442_010 0.1390508915 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
11 Hb_003090_150 0.1393629517 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 1 [Jatropha curcas]
12 Hb_071072_010 0.1434643587 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
13 Hb_001776_200 0.1436170685 - - PREDICTED: COP9 signalosome complex subunit 2 isoform X2 [Pyrus x bretschneideri]
14 Hb_012305_140 0.1439111014 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X1 [Jatropha curcas]
15 Hb_000163_230 0.1441934982 - - Phytochrome A-associated F-box protein, putative [Ricinus communis]
16 Hb_005941_020 0.1461756978 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
17 Hb_002030_110 0.149635153 - - PREDICTED: RING-H2 finger protein ATL32-like [Jatropha curcas]
18 Hb_001894_160 0.1516999796 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001102_090 0.1518509317 - - PREDICTED: mitogen-activated protein kinase 19 [Jatropha curcas]
20 Hb_005568_130 0.1546490422 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_032202_050 Hb_032202_050 Hb_005394_010 Hb_005394_010 Hb_032202_050--Hb_005394_010 Hb_005496_160 Hb_005496_160 Hb_032202_050--Hb_005496_160 Hb_033930_010 Hb_033930_010 Hb_032202_050--Hb_033930_010 Hb_011671_110 Hb_011671_110 Hb_032202_050--Hb_011671_110 Hb_002609_190 Hb_002609_190 Hb_032202_050--Hb_002609_190 Hb_003216_050 Hb_003216_050 Hb_032202_050--Hb_003216_050 Hb_041895_040 Hb_041895_040 Hb_005394_010--Hb_041895_040 Hb_005394_010--Hb_011671_110 Hb_001246_160 Hb_001246_160 Hb_005394_010--Hb_001246_160 Hb_047442_010 Hb_047442_010 Hb_005394_010--Hb_047442_010 Hb_015026_040 Hb_015026_040 Hb_005394_010--Hb_015026_040 Hb_000163_230 Hb_000163_230 Hb_005394_010--Hb_000163_230 Hb_000649_300 Hb_000649_300 Hb_005496_160--Hb_000649_300 Hb_002154_020 Hb_002154_020 Hb_005496_160--Hb_002154_020 Hb_007849_050 Hb_007849_050 Hb_005496_160--Hb_007849_050 Hb_001053_200 Hb_001053_200 Hb_005496_160--Hb_001053_200 Hb_007007_080 Hb_007007_080 Hb_005496_160--Hb_007007_080 Hb_001951_240 Hb_001951_240 Hb_005496_160--Hb_001951_240 Hb_005941_020 Hb_005941_020 Hb_033930_010--Hb_005941_020 Hb_001894_160 Hb_001894_160 Hb_033930_010--Hb_001894_160 Hb_033930_010--Hb_011671_110 Hb_000318_410 Hb_000318_410 Hb_033930_010--Hb_000318_410 Hb_000622_210 Hb_000622_210 Hb_033930_010--Hb_000622_210 Hb_000086_640 Hb_000086_640 Hb_033930_010--Hb_000086_640 Hb_011671_110--Hb_001894_160 Hb_011671_110--Hb_005941_020 Hb_015026_020 Hb_015026_020 Hb_011671_110--Hb_015026_020 Hb_001776_200 Hb_001776_200 Hb_011671_110--Hb_001776_200 Hb_001133_090 Hb_001133_090 Hb_002609_190--Hb_001133_090 Hb_012305_140 Hb_012305_140 Hb_002609_190--Hb_012305_140 Hb_004800_130 Hb_004800_130 Hb_002609_190--Hb_004800_130 Hb_007031_040 Hb_007031_040 Hb_002609_190--Hb_007031_040 Hb_002259_110 Hb_002259_110 Hb_002609_190--Hb_002259_110 Hb_001205_180 Hb_001205_180 Hb_002609_190--Hb_001205_180 Hb_005568_130 Hb_005568_130 Hb_003216_050--Hb_005568_130 Hb_001662_170 Hb_001662_170 Hb_003216_050--Hb_001662_170 Hb_003216_050--Hb_001053_200 Hb_008103_100 Hb_008103_100 Hb_003216_050--Hb_008103_100 Hb_001409_050 Hb_001409_050 Hb_003216_050--Hb_001409_050 Hb_003216_050--Hb_000649_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.49478 24.2947 21.4586 8.82625 3.71591 4.36529
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.27464 0.684062 1.26559 4.3932 5.6291

CAGE analysis