Hb_078954_010

Information

Type -
Description -
Location Contig78954: 3277-4908
Sequence    

Annotation

kegg
ID rcu:RCOM_0841800
description hypothetical protein
nr
ID XP_002528655.1
description hypothetical protein RCOM_0841800 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SRN6
description Putative uncharacterized protein (Fragment) OS=Ricinus communis GN=RCOM_0841800 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_078954_010 0.0 - - hypothetical protein RCOM_0841800 [Ricinus communis]
2 Hb_065755_020 0.146038979 - - choline monooxygenase, putative [Ricinus communis]
3 Hb_095471_020 0.1573904007 - - -
4 Hb_002897_010 0.1766008876 - - PREDICTED: probable inactive receptor kinase At5g58300 [Jatropha curcas]
5 Hb_011671_280 0.1905906831 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF106-like [Populus euphratica]
6 Hb_000809_140 0.1908164823 - - hypothetical protein JCGZ_12354 [Jatropha curcas]
7 Hb_003747_050 0.1941977532 - - PREDICTED: WD repeat-containing protein LWD1 [Jatropha curcas]
8 Hb_001294_040 0.1945802468 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
9 Hb_008250_020 0.195889368 - - PREDICTED: U-box domain-containing protein 15-like isoform X1 [Jatropha curcas]
10 Hb_000015_150 0.1971038696 - - Ubiquitin-conjugating enzyme E2 7 family protein [Populus trichocarpa]
11 Hb_004667_040 0.1979569189 - - ATP binding protein, putative [Ricinus communis]
12 Hb_001776_200 0.1986845975 - - PREDICTED: COP9 signalosome complex subunit 2 isoform X2 [Pyrus x bretschneideri]
13 Hb_025964_040 0.2002791212 - - PREDICTED: putative gamma-glutamylcyclotransferase At3g02910 [Jatropha curcas]
14 Hb_001235_160 0.2032660929 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001114_020 0.2050747021 desease resistance Gene Name: LRR_4 Disease resistance protein RPM1, putative [Ricinus communis]
16 Hb_001386_100 0.2060506359 transcription factor TF Family: M-type PREDICTED: MADS-box transcription factor PHERES 1-like [Jatropha curcas]
17 Hb_000111_390 0.2074706111 - - PREDICTED: uncharacterized protein LOC105631262 isoform X1 [Jatropha curcas]
18 Hb_001158_120 0.2090000718 - - PREDICTED: uncharacterized protein LOC105648761 isoform X1 [Jatropha curcas]
19 Hb_032202_050 0.2097242557 transcription factor TF Family: TCP conserved hypothetical protein [Ricinus communis]
20 Hb_000803_090 0.2119567952 - - PREDICTED: transcription initiation factor IIB isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_078954_010 Hb_078954_010 Hb_065755_020 Hb_065755_020 Hb_078954_010--Hb_065755_020 Hb_095471_020 Hb_095471_020 Hb_078954_010--Hb_095471_020 Hb_002897_010 Hb_002897_010 Hb_078954_010--Hb_002897_010 Hb_011671_280 Hb_011671_280 Hb_078954_010--Hb_011671_280 Hb_000809_140 Hb_000809_140 Hb_078954_010--Hb_000809_140 Hb_003747_050 Hb_003747_050 Hb_078954_010--Hb_003747_050 Hb_065755_020--Hb_095471_020 Hb_046109_010 Hb_046109_010 Hb_065755_020--Hb_046109_010 Hb_004667_040 Hb_004667_040 Hb_065755_020--Hb_004667_040 Hb_032202_050 Hb_032202_050 Hb_065755_020--Hb_032202_050 Hb_002965_070 Hb_002965_070 Hb_065755_020--Hb_002965_070 Hb_001776_200 Hb_001776_200 Hb_095471_020--Hb_001776_200 Hb_095471_020--Hb_004667_040 Hb_005724_050 Hb_005724_050 Hb_095471_020--Hb_005724_050 Hb_001294_040 Hb_001294_040 Hb_095471_020--Hb_001294_040 Hb_002463_050 Hb_002463_050 Hb_002897_010--Hb_002463_050 Hb_003687_040 Hb_003687_040 Hb_002897_010--Hb_003687_040 Hb_000316_060 Hb_000316_060 Hb_002897_010--Hb_000316_060 Hb_000320_310 Hb_000320_310 Hb_002897_010--Hb_000320_310 Hb_008250_020 Hb_008250_020 Hb_002897_010--Hb_008250_020 Hb_004678_030 Hb_004678_030 Hb_002897_010--Hb_004678_030 Hb_001414_050 Hb_001414_050 Hb_011671_280--Hb_001414_050 Hb_000077_210 Hb_000077_210 Hb_011671_280--Hb_000077_210 Hb_000015_150 Hb_000015_150 Hb_011671_280--Hb_000015_150 Hb_000654_050 Hb_000654_050 Hb_011671_280--Hb_000654_050 Hb_001999_320 Hb_001999_320 Hb_011671_280--Hb_001999_320 Hb_000196_010 Hb_000196_010 Hb_011671_280--Hb_000196_010 Hb_001386_100 Hb_001386_100 Hb_000809_140--Hb_001386_100 Hb_001235_160 Hb_001235_160 Hb_000809_140--Hb_001235_160 Hb_000809_140--Hb_095471_020 Hb_000308_010 Hb_000308_010 Hb_000809_140--Hb_000308_010 Hb_000809_140--Hb_065755_020 Hb_000809_140--Hb_001294_040 Hb_000803_090 Hb_000803_090 Hb_003747_050--Hb_000803_090 Hb_011671_110 Hb_011671_110 Hb_003747_050--Hb_011671_110 Hb_047442_010 Hb_047442_010 Hb_003747_050--Hb_047442_010 Hb_012787_030 Hb_012787_030 Hb_003747_050--Hb_012787_030 Hb_002600_130 Hb_002600_130 Hb_003747_050--Hb_002600_130 Hb_000317_190 Hb_000317_190 Hb_003747_050--Hb_000317_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.120779 0.193887 0.361554 0.150827 0.024144 0.0369336
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0889533 0.0936589

CAGE analysis