Hb_004667_040

Information

Type -
Description -
Location Contig4667: 51295-53658
Sequence    

Annotation

kegg
ID rcu:RCOM_0455900
description ATP binding protein, putative (EC:3.1.3.16)
nr
ID XP_002529498.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID P0DI18
description Probable disease resistance protein RDL6 OS=Arabidopsis thaliana GN=RDL6 PE=2 SV=1
trembl
ID B9SU29
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0455900 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004667_040 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_002641_050 0.1413156757 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 48 [Jatropha curcas]
3 Hb_095471_020 0.1468015424 - - -
4 Hb_065755_020 0.1511049918 - - choline monooxygenase, putative [Ricinus communis]
5 Hb_000069_430 0.1658290126 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
6 Hb_025236_020 0.169358766 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
7 Hb_002343_020 0.1695532987 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
8 Hb_013938_010 0.171534991 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X3 [Citrus sinensis]
9 Hb_000008_430 0.1838538643 - - PREDICTED: zinc finger CCCH domain-containing protein 24 isoform X1 [Jatropha curcas]
10 Hb_184008_010 0.185837991 - - putative LRR receptor-like serine/threonine-protein kinase [Morus notabilis]
11 Hb_046109_010 0.1864110815 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
12 Hb_002073_020 0.1867499044 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
13 Hb_001294_040 0.1888715788 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
14 Hb_033053_010 0.190809021 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
15 Hb_005724_050 0.1955587561 - - -
16 Hb_003964_010 0.1955765407 transcription factor TF Family: WRKY hypothetical protein POPTR_0008s09360g [Populus trichocarpa]
17 Hb_006831_080 0.1957311849 - - PREDICTED: uncharacterized protein LOC105642126 [Jatropha curcas]
18 Hb_000661_280 0.1958944873 - - PREDICTED: protein TRAUCO [Jatropha curcas]
19 Hb_000092_080 0.1961204654 desease resistance Gene Name: NB-ARC hypothetical protein VITISV_038742 [Vitis vinifera]
20 Hb_005539_100 0.1970448776 - - nucleoside transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_004667_040 Hb_004667_040 Hb_002641_050 Hb_002641_050 Hb_004667_040--Hb_002641_050 Hb_095471_020 Hb_095471_020 Hb_004667_040--Hb_095471_020 Hb_065755_020 Hb_065755_020 Hb_004667_040--Hb_065755_020 Hb_000069_430 Hb_000069_430 Hb_004667_040--Hb_000069_430 Hb_025236_020 Hb_025236_020 Hb_004667_040--Hb_025236_020 Hb_002343_020 Hb_002343_020 Hb_004667_040--Hb_002343_020 Hb_001318_110 Hb_001318_110 Hb_002641_050--Hb_001318_110 Hb_002641_050--Hb_025236_020 Hb_013938_010 Hb_013938_010 Hb_002641_050--Hb_013938_010 Hb_002641_050--Hb_002343_020 Hb_184008_010 Hb_184008_010 Hb_002641_050--Hb_184008_010 Hb_095471_020--Hb_065755_020 Hb_001776_200 Hb_001776_200 Hb_095471_020--Hb_001776_200 Hb_078954_010 Hb_078954_010 Hb_095471_020--Hb_078954_010 Hb_005724_050 Hb_005724_050 Hb_095471_020--Hb_005724_050 Hb_001294_040 Hb_001294_040 Hb_095471_020--Hb_001294_040 Hb_065755_020--Hb_078954_010 Hb_046109_010 Hb_046109_010 Hb_065755_020--Hb_046109_010 Hb_032202_050 Hb_032202_050 Hb_065755_020--Hb_032202_050 Hb_002965_070 Hb_002965_070 Hb_065755_020--Hb_002965_070 Hb_164926_050 Hb_164926_050 Hb_000069_430--Hb_164926_050 Hb_002078_250 Hb_002078_250 Hb_000069_430--Hb_002078_250 Hb_149484_010 Hb_149484_010 Hb_000069_430--Hb_149484_010 Hb_005539_100 Hb_005539_100 Hb_000069_430--Hb_005539_100 Hb_023386_050 Hb_023386_050 Hb_000069_430--Hb_023386_050 Hb_005000_050 Hb_005000_050 Hb_000069_430--Hb_005000_050 Hb_025236_020--Hb_002343_020 Hb_000421_020 Hb_000421_020 Hb_025236_020--Hb_000421_020 Hb_005814_010 Hb_005814_010 Hb_025236_020--Hb_005814_010 Hb_052434_010 Hb_052434_010 Hb_025236_020--Hb_052434_010 Hb_003529_230 Hb_003529_230 Hb_025236_020--Hb_003529_230 Hb_000771_070 Hb_000771_070 Hb_025236_020--Hb_000771_070 Hb_000402_030 Hb_000402_030 Hb_002343_020--Hb_000402_030 Hb_005649_010 Hb_005649_010 Hb_002343_020--Hb_005649_010 Hb_004032_090 Hb_004032_090 Hb_002343_020--Hb_004032_090 Hb_001123_170 Hb_001123_170 Hb_002343_020--Hb_001123_170 Hb_005375_070 Hb_005375_070 Hb_002343_020--Hb_005375_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.165244 0.578903 0.496773 0.284775 0.0428337 0.0100169
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0204701 0 0.31803 0.129258

CAGE analysis