Hb_046109_010

Information

Type -
Description -
Location Contig46109: 2248-3168
Sequence    

Annotation

kegg
ID rcu:RCOM_0687360
description leucine-rich repeat-containing protein 2, lrrc2, putative (EC:3.1.3.16)
nr
ID XP_012090562.1
description PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID A0A067LBZ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01203 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_046109_010 0.0 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
2 Hb_033053_010 0.0968265739 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
3 Hb_007574_050 0.1225714378 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
4 Hb_000069_430 0.1334687015 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
5 Hb_164926_050 0.1354606638 - - PREDICTED: subtilisin-like protease SBT3.5 [Jatropha curcas]
6 Hb_001019_020 0.1382605101 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002936_030 0.1385499869 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
8 Hb_003078_070 0.138742314 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g25290 [Jatropha curcas]
9 Hb_000402_030 0.1423232529 - - PREDICTED: cysteine-rich receptor-like protein kinase 2 [Jatropha curcas]
10 Hb_005375_070 0.1429380905 transcription factor TF Family: MYB-related PREDICTED: protein LHY [Jatropha curcas]
11 Hb_001989_070 0.1443573401 - - PREDICTED: uncharacterized calcium-binding protein At1g02270 [Jatropha curcas]
12 Hb_001247_160 0.1453952015 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
13 Hb_065755_020 0.1470650593 - - choline monooxygenase, putative [Ricinus communis]
14 Hb_002233_080 0.1497843228 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
15 Hb_001158_120 0.149785794 - - PREDICTED: uncharacterized protein LOC105648761 isoform X1 [Jatropha curcas]
16 Hb_000366_050 0.1520473609 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
17 Hb_000985_140 0.1529024395 - - PREDICTED: uncharacterized protein LOC105643381 isoform X3 [Jatropha curcas]
18 Hb_002014_050 0.1551686895 - - PREDICTED: proline-rich receptor-like protein kinase PERK1 isoform X2 [Populus euphratica]
19 Hb_054232_020 0.1551778104 - - Potassium channel SKOR, putative [Ricinus communis]
20 Hb_002375_060 0.1553218975 - - PREDICTED: uncharacterized protein LOC105628271 [Jatropha curcas]

Gene co-expression network

sample Hb_046109_010 Hb_046109_010 Hb_033053_010 Hb_033053_010 Hb_046109_010--Hb_033053_010 Hb_007574_050 Hb_007574_050 Hb_046109_010--Hb_007574_050 Hb_000069_430 Hb_000069_430 Hb_046109_010--Hb_000069_430 Hb_164926_050 Hb_164926_050 Hb_046109_010--Hb_164926_050 Hb_001019_020 Hb_001019_020 Hb_046109_010--Hb_001019_020 Hb_002936_030 Hb_002936_030 Hb_046109_010--Hb_002936_030 Hb_033053_010--Hb_164926_050 Hb_033053_010--Hb_007574_050 Hb_007904_290 Hb_007904_290 Hb_033053_010--Hb_007904_290 Hb_012272_010 Hb_012272_010 Hb_033053_010--Hb_012272_010 Hb_000340_560 Hb_000340_560 Hb_033053_010--Hb_000340_560 Hb_098160_010 Hb_098160_010 Hb_007574_050--Hb_098160_010 Hb_001898_010 Hb_001898_010 Hb_007574_050--Hb_001898_010 Hb_005375_070 Hb_005375_070 Hb_007574_050--Hb_005375_070 Hb_007574_050--Hb_002936_030 Hb_000402_030 Hb_000402_030 Hb_007574_050--Hb_000402_030 Hb_001405_060 Hb_001405_060 Hb_007574_050--Hb_001405_060 Hb_000069_430--Hb_164926_050 Hb_002078_250 Hb_002078_250 Hb_000069_430--Hb_002078_250 Hb_149484_010 Hb_149484_010 Hb_000069_430--Hb_149484_010 Hb_005539_100 Hb_005539_100 Hb_000069_430--Hb_005539_100 Hb_023386_050 Hb_023386_050 Hb_000069_430--Hb_023386_050 Hb_005000_050 Hb_005000_050 Hb_000069_430--Hb_005000_050 Hb_164926_050--Hb_002078_250 Hb_164926_050--Hb_007574_050 Hb_164926_050--Hb_005000_050 Hb_002235_370 Hb_002235_370 Hb_164926_050--Hb_002235_370 Hb_094437_050 Hb_094437_050 Hb_001019_020--Hb_094437_050 Hb_002233_080 Hb_002233_080 Hb_001019_020--Hb_002233_080 Hb_001247_160 Hb_001247_160 Hb_001019_020--Hb_001247_160 Hb_000047_010 Hb_000047_010 Hb_001019_020--Hb_000047_010 Hb_001019_020--Hb_012272_010 Hb_011915_020 Hb_011915_020 Hb_001019_020--Hb_011915_020 Hb_005048_120 Hb_005048_120 Hb_002936_030--Hb_005048_120 Hb_002936_030--Hb_001247_160 Hb_005282_010 Hb_005282_010 Hb_002936_030--Hb_005282_010 Hb_003078_070 Hb_003078_070 Hb_002936_030--Hb_003078_070 Hb_002936_030--Hb_012272_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.895206 11.9834 9.89267 7.0853 0.546172 0.250267
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0562063 0 0 2.61861 2.78572

CAGE analysis