Hb_001386_100

Information

Type transcription factor
Description TF Family: M-type
Location Contig1386: 160943-162094
Sequence    

Annotation

kegg
ID rcu:RCOM_1677010
description hypothetical protein
nr
ID XP_012072699.1
description PREDICTED: MADS-box transcription factor PHERES 1-like [Jatropha curcas]
swissprot
ID Q7XJK5
description Agamous-like MADS-box protein AGL90 OS=Arabidopsis thaliana GN=AGL90 PE=1 SV=2
trembl
ID A0A067LN79
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10115 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10588: 161589-161714
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001386_100 0.0 transcription factor TF Family: M-type PREDICTED: MADS-box transcription factor PHERES 1-like [Jatropha curcas]
2 Hb_001235_160 0.0965544046 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000809_140 0.1496909737 - - hypothetical protein JCGZ_12354 [Jatropha curcas]
4 Hb_000506_100 0.1709525618 - - PREDICTED: BTB/POZ domain-containing protein At5g48130 [Jatropha curcas]
5 Hb_000343_020 0.1918738389 - - PREDICTED: putative Peroxidase 48 [Jatropha curcas]
6 Hb_002874_120 0.1929511124 - - PREDICTED: calmodulin-like protein 7 [Jatropha curcas]
7 Hb_008250_020 0.1930520185 - - PREDICTED: U-box domain-containing protein 15-like isoform X1 [Jatropha curcas]
8 Hb_002078_230 0.1938088175 - - PREDICTED: HORMA domain-containing protein 1 [Jatropha curcas]
9 Hb_002095_050 0.1960444932 - - PREDICTED: uncharacterized protein LOC104447479 [Eucalyptus grandis]
10 Hb_001776_130 0.1965201855 - - metallothionein [Hevea brasiliensis]
11 Hb_173029_030 0.2021964916 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000320_040 0.2026384509 - - ATP binding protein, putative [Ricinus communis]
13 Hb_011485_030 0.2037175587 - - PREDICTED: uncharacterized protein LOC105647814 [Jatropha curcas]
14 Hb_000181_270 0.2046631818 - - ATP binding protein, putative [Ricinus communis]
15 Hb_078954_010 0.2060506359 - - hypothetical protein RCOM_0841800 [Ricinus communis]
16 Hb_002897_010 0.2071285751 - - PREDICTED: probable inactive receptor kinase At5g58300 [Jatropha curcas]
17 Hb_001536_020 0.2085069947 transcription factor TF Family: GRF PREDICTED: uncharacterized protein LOC105631006 [Jatropha curcas]
18 Hb_014361_170 0.2088581313 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 37 [Jatropha curcas]
19 Hb_001294_040 0.2130684751 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
20 Hb_006153_010 0.2168781507 - - PREDICTED: monocopper oxidase-like protein SKU5 [Populus euphratica]

Gene co-expression network

sample Hb_001386_100 Hb_001386_100 Hb_001235_160 Hb_001235_160 Hb_001386_100--Hb_001235_160 Hb_000809_140 Hb_000809_140 Hb_001386_100--Hb_000809_140 Hb_000506_100 Hb_000506_100 Hb_001386_100--Hb_000506_100 Hb_000343_020 Hb_000343_020 Hb_001386_100--Hb_000343_020 Hb_002874_120 Hb_002874_120 Hb_001386_100--Hb_002874_120 Hb_008250_020 Hb_008250_020 Hb_001386_100--Hb_008250_020 Hb_001235_160--Hb_008250_020 Hb_001776_130 Hb_001776_130 Hb_001235_160--Hb_001776_130 Hb_002095_050 Hb_002095_050 Hb_001235_160--Hb_002095_050 Hb_000320_040 Hb_000320_040 Hb_001235_160--Hb_000320_040 Hb_006153_010 Hb_006153_010 Hb_001235_160--Hb_006153_010 Hb_000809_140--Hb_001235_160 Hb_095471_020 Hb_095471_020 Hb_000809_140--Hb_095471_020 Hb_000308_010 Hb_000308_010 Hb_000809_140--Hb_000308_010 Hb_065755_020 Hb_065755_020 Hb_000809_140--Hb_065755_020 Hb_001294_040 Hb_001294_040 Hb_000809_140--Hb_001294_040 Hb_000506_100--Hb_002874_120 Hb_000506_100--Hb_000343_020 Hb_001536_020 Hb_001536_020 Hb_000506_100--Hb_001536_020 Hb_007101_270 Hb_007101_270 Hb_000506_100--Hb_007101_270 Hb_005834_050 Hb_005834_050 Hb_000506_100--Hb_005834_050 Hb_000343_020--Hb_002874_120 Hb_009339_040 Hb_009339_040 Hb_000343_020--Hb_009339_040 Hb_002081_060 Hb_002081_060 Hb_000343_020--Hb_002081_060 Hb_004607_020 Hb_004607_020 Hb_000343_020--Hb_004607_020 Hb_011849_030 Hb_011849_030 Hb_000343_020--Hb_011849_030 Hb_033152_060 Hb_033152_060 Hb_000343_020--Hb_033152_060 Hb_002874_120--Hb_011849_030 Hb_002918_220 Hb_002918_220 Hb_002874_120--Hb_002918_220 Hb_005568_140 Hb_005568_140 Hb_002874_120--Hb_005568_140 Hb_027337_010 Hb_027337_010 Hb_002874_120--Hb_027337_010 Hb_000200_270 Hb_000200_270 Hb_002874_120--Hb_000200_270 Hb_008250_020--Hb_006153_010 Hb_002897_010 Hb_002897_010 Hb_008250_020--Hb_002897_010 Hb_000395_120 Hb_000395_120 Hb_008250_020--Hb_000395_120 Hb_000260_610 Hb_000260_610 Hb_008250_020--Hb_000260_610 Hb_002463_050 Hb_002463_050 Hb_008250_020--Hb_002463_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.172231 0.360049 1.14561 0.355213 0.0349409 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0426097 0 0 0.282174 0.138403

CAGE analysis