Hb_009979_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig9979: 257-3199
Sequence    

Annotation

kegg
ID rcu:RCOM_0751360
description leucine-rich repeat containing protein, putative (EC:3.1.3.16)
nr
ID XP_012065986.1
description PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
swissprot
ID Q7XA42
description Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2
trembl
ID A0A067JQ82
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64904: 155-859
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009979_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
2 Hb_183192_010 0.1209805738 - - PREDICTED: thioredoxin reductase NTRC [Sesamum indicum]
3 Hb_012022_020 0.1261343517 transcription factor TF Family: G2-like hypothetical protein POPTR_0006s10190g [Populus trichocarpa]
4 Hb_004021_090 0.1674395582 - - hypothetical protein JCGZ_09233 [Jatropha curcas]
5 Hb_001628_020 0.1677543261 - - receptor serine/threonine kinase, putative [Ricinus communis]
6 Hb_001141_200 0.1680969946 - - PREDICTED: LOW QUALITY PROTEIN: parafibromin [Prunus mume]
7 Hb_001004_050 0.171146972 - - PREDICTED: uncharacterized protein LOC103335231 [Prunus mume]
8 Hb_001369_670 0.1795260525 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
9 Hb_000819_020 0.1815784073 - - hypothetical protein PRUPE_ppa020290mg, partial [Prunus persica]
10 Hb_001486_210 0.1844083724 - - -
11 Hb_001846_030 0.1889220664 - - PREDICTED: cytochrome P450 94A2-like [Jatropha curcas]
12 Hb_017693_040 0.1944960709 - - tyrosine kinase family protein [Medicago truncatula]
13 Hb_001999_170 0.1972844536 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
14 Hb_030903_020 0.1974804031 - - PREDICTED: putative 12-oxophytodienoate reductase 11 [Jatropha curcas]
15 Hb_032071_010 0.1975492232 - - hypothetical protein EUGRSUZ_J02969 [Eucalyptus grandis]
16 Hb_120011_010 0.197843261 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
17 Hb_001310_010 0.2011882318 - - PREDICTED: calcium-transporting ATPase 2, plasma membrane-type [Jatropha curcas]
18 Hb_008948_070 0.2021682619 - - PREDICTED: phospholipase D alpha 1-like isoform X1 [Jatropha curcas]
19 Hb_164577_010 0.2026605884 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
20 Hb_010964_010 0.204179326 - - -

Gene co-expression network

sample Hb_009979_010 Hb_009979_010 Hb_183192_010 Hb_183192_010 Hb_009979_010--Hb_183192_010 Hb_012022_020 Hb_012022_020 Hb_009979_010--Hb_012022_020 Hb_004021_090 Hb_004021_090 Hb_009979_010--Hb_004021_090 Hb_001628_020 Hb_001628_020 Hb_009979_010--Hb_001628_020 Hb_001141_200 Hb_001141_200 Hb_009979_010--Hb_001141_200 Hb_001004_050 Hb_001004_050 Hb_009979_010--Hb_001004_050 Hb_004495_010 Hb_004495_010 Hb_183192_010--Hb_004495_010 Hb_183192_010--Hb_001628_020 Hb_001369_670 Hb_001369_670 Hb_183192_010--Hb_001369_670 Hb_029689_010 Hb_029689_010 Hb_183192_010--Hb_029689_010 Hb_183192_010--Hb_012022_020 Hb_017693_040 Hb_017693_040 Hb_012022_020--Hb_017693_040 Hb_001846_030 Hb_001846_030 Hb_012022_020--Hb_001846_030 Hb_000069_530 Hb_000069_530 Hb_012022_020--Hb_000069_530 Hb_032071_010 Hb_032071_010 Hb_012022_020--Hb_032071_010 Hb_120011_010 Hb_120011_010 Hb_012022_020--Hb_120011_010 Hb_077694_010 Hb_077694_010 Hb_012022_020--Hb_077694_010 Hb_001486_210 Hb_001486_210 Hb_004021_090--Hb_001486_210 Hb_000787_010 Hb_000787_010 Hb_004021_090--Hb_000787_010 Hb_028639_040 Hb_028639_040 Hb_004021_090--Hb_028639_040 Hb_004021_090--Hb_183192_010 Hb_115513_030 Hb_115513_030 Hb_004021_090--Hb_115513_030 Hb_001628_020--Hb_001141_200 Hb_010721_010 Hb_010721_010 Hb_001628_020--Hb_010721_010 Hb_002936_030 Hb_002936_030 Hb_001628_020--Hb_002936_030 Hb_007574_050 Hb_007574_050 Hb_001628_020--Hb_007574_050 Hb_000087_200 Hb_000087_200 Hb_001628_020--Hb_000087_200 Hb_005048_120 Hb_005048_120 Hb_001628_020--Hb_005048_120 Hb_006395_020 Hb_006395_020 Hb_001141_200--Hb_006395_020 Hb_012404_050 Hb_012404_050 Hb_001141_200--Hb_012404_050 Hb_043522_010 Hb_043522_010 Hb_001141_200--Hb_043522_010 Hb_158111_010 Hb_158111_010 Hb_001141_200--Hb_158111_010 Hb_000819_020 Hb_000819_020 Hb_001141_200--Hb_000819_020 Hb_002447_160 Hb_002447_160 Hb_001004_050--Hb_002447_160 Hb_001004_050--Hb_183192_010 Hb_001004_050--Hb_001141_200 Hb_001004_050--Hb_004021_090 Hb_096473_010 Hb_096473_010 Hb_001004_050--Hb_096473_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.92712 38.3259 42.4972 12.0635 0 0.250962
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0501762 0 0 2.68154 0.565453

CAGE analysis