Hb_001486_210

Information

Type -
Description -
Location Contig1486: 148459-149440
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID Q9ZVT9
description C2 and GRAM domain-containing protein At1g03370 OS=Arabidopsis thaliana GN=At1g03370 PE=2 SV=4
trembl
ID -
description -
Gene Ontology
ID GO:0005783
description multiple c2 and transmembrane domain-containing protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12255: 143797-148584
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001486_210 0.0 - - -
2 Hb_004021_090 0.1675817644 - - hypothetical protein JCGZ_09233 [Jatropha curcas]
3 Hb_009979_010 0.1844083724 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
4 Hb_010994_020 0.1909883815 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
5 Hb_002007_070 0.1914271675 - - PREDICTED: serrate RNA effector molecule homolog [Jatropha curcas]
6 Hb_183192_010 0.1933700414 - - PREDICTED: thioredoxin reductase NTRC [Sesamum indicum]
7 Hb_164577_010 0.2034375116 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
8 Hb_009692_030 0.2040282041 - - WRKY DNA-binding protein 70, putative isoform 2, partial [Theobroma cacao]
9 Hb_186589_010 0.205316445 - - PREDICTED: developmentally-regulated G-protein 3 [Nelumbo nucifera]
10 Hb_007894_020 0.2056099672 - - protein translation factor SUI1 homolog 2 [Jatropha curcas]
11 Hb_002133_010 0.2068036522 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
12 Hb_173271_010 0.2111923885 - - Disease resistance protein RPP13, putative [Ricinus communis]
13 Hb_128083_010 0.211937954 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
14 Hb_000162_130 0.2135021611 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002982_030 0.2169865429 - - Chalcone synthase, putative [Ricinus communis]
16 Hb_123475_020 0.217491783 - - -
17 Hb_000997_130 0.2182650886 - - DNA binding protein, putative [Ricinus communis]
18 Hb_004899_010 0.2199323377 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
19 Hb_008637_020 0.2222815112 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000819_020 0.223641011 - - hypothetical protein PRUPE_ppa020290mg, partial [Prunus persica]

Gene co-expression network

sample Hb_001486_210 Hb_001486_210 Hb_004021_090 Hb_004021_090 Hb_001486_210--Hb_004021_090 Hb_009979_010 Hb_009979_010 Hb_001486_210--Hb_009979_010 Hb_010994_020 Hb_010994_020 Hb_001486_210--Hb_010994_020 Hb_002007_070 Hb_002007_070 Hb_001486_210--Hb_002007_070 Hb_183192_010 Hb_183192_010 Hb_001486_210--Hb_183192_010 Hb_164577_010 Hb_164577_010 Hb_001486_210--Hb_164577_010 Hb_004021_090--Hb_009979_010 Hb_000787_010 Hb_000787_010 Hb_004021_090--Hb_000787_010 Hb_028639_040 Hb_028639_040 Hb_004021_090--Hb_028639_040 Hb_004021_090--Hb_183192_010 Hb_115513_030 Hb_115513_030 Hb_004021_090--Hb_115513_030 Hb_009979_010--Hb_183192_010 Hb_012022_020 Hb_012022_020 Hb_009979_010--Hb_012022_020 Hb_001628_020 Hb_001628_020 Hb_009979_010--Hb_001628_020 Hb_001141_200 Hb_001141_200 Hb_009979_010--Hb_001141_200 Hb_001004_050 Hb_001004_050 Hb_009979_010--Hb_001004_050 Hb_008651_010 Hb_008651_010 Hb_010994_020--Hb_008651_010 Hb_010223_010 Hb_010223_010 Hb_010994_020--Hb_010223_010 Hb_107174_010 Hb_107174_010 Hb_010994_020--Hb_107174_010 Hb_030903_020 Hb_030903_020 Hb_010994_020--Hb_030903_020 Hb_000997_130 Hb_000997_130 Hb_010994_020--Hb_000997_130 Hb_179363_010 Hb_179363_010 Hb_010994_020--Hb_179363_010 Hb_000680_180 Hb_000680_180 Hb_002007_070--Hb_000680_180 Hb_000162_130 Hb_000162_130 Hb_002007_070--Hb_000162_130 Hb_010126_030 Hb_010126_030 Hb_002007_070--Hb_010126_030 Hb_000256_180 Hb_000256_180 Hb_002007_070--Hb_000256_180 Hb_004612_020 Hb_004612_020 Hb_002007_070--Hb_004612_020 Hb_000984_290 Hb_000984_290 Hb_002007_070--Hb_000984_290 Hb_004495_010 Hb_004495_010 Hb_183192_010--Hb_004495_010 Hb_183192_010--Hb_001628_020 Hb_001369_670 Hb_001369_670 Hb_183192_010--Hb_001369_670 Hb_029689_010 Hb_029689_010 Hb_183192_010--Hb_029689_010 Hb_183192_010--Hb_012022_020 Hb_046610_010 Hb_046610_010 Hb_164577_010--Hb_046610_010 Hb_164577_010--Hb_000997_130 Hb_007546_010 Hb_007546_010 Hb_164577_010--Hb_007546_010 Hb_008637_020 Hb_008637_020 Hb_164577_010--Hb_008637_020 Hb_002289_180 Hb_002289_180 Hb_164577_010--Hb_002289_180 Hb_000819_020 Hb_000819_020 Hb_164577_010--Hb_000819_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.472864 2.45105 3.41063 1.03717 0.0618965 0.0292227
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0760653 0.119605 0 0 0

CAGE analysis