Hb_012022_020

Information

Type transcription factor
Description TF Family: G2-like
Location Contig12022: 34394-35775
Sequence    

Annotation

kegg
ID pop:POPTR_0006s10190g
description POPTRDRAFT_560918; hypothetical protein
nr
ID XP_002308222.2
description hypothetical protein POPTR_0006s10190g [Populus trichocarpa]
swissprot
ID Q8GUN5
description Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1
trembl
ID B9HCX3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s10190g PE=4 SV=2
Gene Ontology
ID GO:0003677
description protein phr1-like 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06259: 34613-35745
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012022_020 0.0 transcription factor TF Family: G2-like hypothetical protein POPTR_0006s10190g [Populus trichocarpa]
2 Hb_017693_040 0.1086906106 - - tyrosine kinase family protein [Medicago truncatula]
3 Hb_001846_030 0.1125775863 - - PREDICTED: cytochrome P450 94A2-like [Jatropha curcas]
4 Hb_000069_530 0.1150691542 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
5 Hb_032071_010 0.1154082056 - - hypothetical protein EUGRSUZ_J02969 [Eucalyptus grandis]
6 Hb_120011_010 0.1197633123 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
7 Hb_077694_010 0.1251705385 - - uncharacterized protein LOC100305624 [Glycine max]
8 Hb_009979_010 0.1261343517 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
9 Hb_005381_010 0.1317270862 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH35 isoform X1 [Jatropha curcas]
10 Hb_074672_010 0.1328266178 - - receptor serine/threonine kinase, putative [Ricinus communis]
11 Hb_000164_160 0.1334689917 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
12 Hb_008948_070 0.1339365027 - - PREDICTED: phospholipase D alpha 1-like isoform X1 [Jatropha curcas]
13 Hb_121540_010 0.1370730857 - - PREDICTED: UDP-glycosyltransferase 88A1-like [Jatropha curcas]
14 Hb_004612_020 0.138504057 - - PREDICTED: tetraspanin-8-like [Populus euphratica]
15 Hb_000997_130 0.1385114685 - - DNA binding protein, putative [Ricinus communis]
16 Hb_000592_070 0.1411771386 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
17 Hb_030903_020 0.141588605 - - PREDICTED: putative 12-oxophytodienoate reductase 11 [Jatropha curcas]
18 Hb_000192_030 0.142532523 - - PREDICTED: TATA-box-binding protein 2 isoform X1 [Setaria italica]
19 Hb_000819_020 0.1430480963 - - hypothetical protein PRUPE_ppa020290mg, partial [Prunus persica]
20 Hb_004899_010 0.1439663236 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]

Gene co-expression network

sample Hb_012022_020 Hb_012022_020 Hb_017693_040 Hb_017693_040 Hb_012022_020--Hb_017693_040 Hb_001846_030 Hb_001846_030 Hb_012022_020--Hb_001846_030 Hb_000069_530 Hb_000069_530 Hb_012022_020--Hb_000069_530 Hb_032071_010 Hb_032071_010 Hb_012022_020--Hb_032071_010 Hb_120011_010 Hb_120011_010 Hb_012022_020--Hb_120011_010 Hb_077694_010 Hb_077694_010 Hb_012022_020--Hb_077694_010 Hb_017693_040--Hb_077694_010 Hb_121540_010 Hb_121540_010 Hb_017693_040--Hb_121540_010 Hb_000087_200 Hb_000087_200 Hb_017693_040--Hb_000087_200 Hb_001635_230 Hb_001635_230 Hb_017693_040--Hb_001635_230 Hb_000359_260 Hb_000359_260 Hb_017693_040--Hb_000359_260 Hb_008948_070 Hb_008948_070 Hb_001846_030--Hb_008948_070 Hb_001846_030--Hb_032071_010 Hb_006478_140 Hb_006478_140 Hb_001846_030--Hb_006478_140 Hb_001846_030--Hb_017693_040 Hb_000192_030 Hb_000192_030 Hb_001846_030--Hb_000192_030 Hb_005381_010 Hb_005381_010 Hb_000069_530--Hb_005381_010 Hb_003060_150 Hb_003060_150 Hb_000069_530--Hb_003060_150 Hb_000069_530--Hb_121540_010 Hb_000069_530--Hb_077694_010 Hb_000592_070 Hb_000592_070 Hb_000069_530--Hb_000592_070 Hb_001660_080 Hb_001660_080 Hb_000069_530--Hb_001660_080 Hb_002289_180 Hb_002289_180 Hb_032071_010--Hb_002289_180 Hb_112703_010 Hb_112703_010 Hb_032071_010--Hb_112703_010 Hb_008651_010 Hb_008651_010 Hb_032071_010--Hb_008651_010 Hb_179363_010 Hb_179363_010 Hb_032071_010--Hb_179363_010 Hb_000997_130 Hb_000997_130 Hb_032071_010--Hb_000997_130 Hb_074672_010 Hb_074672_010 Hb_120011_010--Hb_074672_010 Hb_001619_140 Hb_001619_140 Hb_120011_010--Hb_001619_140 Hb_001310_010 Hb_001310_010 Hb_120011_010--Hb_001310_010 Hb_120011_010--Hb_077694_010 Hb_008202_020 Hb_008202_020 Hb_120011_010--Hb_008202_020 Hb_006615_060 Hb_006615_060 Hb_120011_010--Hb_006615_060 Hb_077694_010--Hb_121540_010 Hb_077694_010--Hb_005381_010 Hb_077694_010--Hb_001660_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.120662 4.72851 5.31195 1.51916 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.265412 0.109369

CAGE analysis