Hb_004021_090

Information

Type -
Description -
Location Contig4021: 88064-90199
Sequence    

Annotation

kegg
ID cit:102626944
description cationic amino acid transporter 1-like
nr
ID KDP34945.1
description hypothetical protein JCGZ_09233 [Jatropha curcas]
swissprot
ID Q84MA5
description Cationic amino acid transporter 1 OS=Arabidopsis thaliana GN=CAT1 PE=1 SV=1
trembl
ID A0A067KRM7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09233 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cationic amino acid transporter 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004021_090 0.0 - - hypothetical protein JCGZ_09233 [Jatropha curcas]
2 Hb_009979_010 0.1674395582 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
3 Hb_001486_210 0.1675817644 - - -
4 Hb_000787_010 0.1753762078 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
5 Hb_028639_040 0.2049565479 - - PREDICTED: uncharacterized protein LOC105761689 [Gossypium raimondii]
6 Hb_183192_010 0.2130860254 - - PREDICTED: thioredoxin reductase NTRC [Sesamum indicum]
7 Hb_115513_030 0.2226356096 - - PREDICTED: uncharacterized protein At2g34160 [Jatropha curcas]
8 Hb_001004_050 0.223280389 - - PREDICTED: uncharacterized protein LOC103335231 [Prunus mume]
9 Hb_164577_010 0.2244252064 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
10 Hb_000926_110 0.2383975369 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
11 Hb_000819_020 0.2424377666 - - hypothetical protein PRUPE_ppa020290mg, partial [Prunus persica]
12 Hb_010994_020 0.2425211399 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
13 Hb_012022_020 0.2436403799 transcription factor TF Family: G2-like hypothetical protein POPTR_0006s10190g [Populus trichocarpa]
14 Hb_186589_010 0.2477157321 - - PREDICTED: developmentally-regulated G-protein 3 [Nelumbo nucifera]
15 Hb_008637_020 0.2484670652 - - conserved hypothetical protein [Ricinus communis]
16 Hb_010477_020 0.2492469174 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
17 Hb_000997_130 0.2531436871 - - DNA binding protein, putative [Ricinus communis]
18 Hb_029689_010 0.257526418 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
19 Hb_002289_180 0.2591210556 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 [Nelumbo nucifera]
20 Hb_046610_010 0.2594779729 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_004021_090 Hb_004021_090 Hb_009979_010 Hb_009979_010 Hb_004021_090--Hb_009979_010 Hb_001486_210 Hb_001486_210 Hb_004021_090--Hb_001486_210 Hb_000787_010 Hb_000787_010 Hb_004021_090--Hb_000787_010 Hb_028639_040 Hb_028639_040 Hb_004021_090--Hb_028639_040 Hb_183192_010 Hb_183192_010 Hb_004021_090--Hb_183192_010 Hb_115513_030 Hb_115513_030 Hb_004021_090--Hb_115513_030 Hb_009979_010--Hb_183192_010 Hb_012022_020 Hb_012022_020 Hb_009979_010--Hb_012022_020 Hb_001628_020 Hb_001628_020 Hb_009979_010--Hb_001628_020 Hb_001141_200 Hb_001141_200 Hb_009979_010--Hb_001141_200 Hb_001004_050 Hb_001004_050 Hb_009979_010--Hb_001004_050 Hb_001486_210--Hb_009979_010 Hb_010994_020 Hb_010994_020 Hb_001486_210--Hb_010994_020 Hb_002007_070 Hb_002007_070 Hb_001486_210--Hb_002007_070 Hb_001486_210--Hb_183192_010 Hb_164577_010 Hb_164577_010 Hb_001486_210--Hb_164577_010 Hb_099990_030 Hb_099990_030 Hb_000787_010--Hb_099990_030 Hb_003768_060 Hb_003768_060 Hb_000787_010--Hb_003768_060 Hb_000787_010--Hb_028639_040 Hb_000589_370 Hb_000589_370 Hb_000787_010--Hb_000589_370 Hb_002235_180 Hb_002235_180 Hb_000787_010--Hb_002235_180 Hb_123475_020 Hb_123475_020 Hb_028639_040--Hb_123475_020 Hb_001762_050 Hb_001762_050 Hb_028639_040--Hb_001762_050 Hb_002874_210 Hb_002874_210 Hb_028639_040--Hb_002874_210 Hb_028639_040--Hb_003768_060 Hb_004495_010 Hb_004495_010 Hb_183192_010--Hb_004495_010 Hb_183192_010--Hb_001628_020 Hb_001369_670 Hb_001369_670 Hb_183192_010--Hb_001369_670 Hb_029689_010 Hb_029689_010 Hb_183192_010--Hb_029689_010 Hb_183192_010--Hb_012022_020 Hb_114250_010 Hb_114250_010 Hb_115513_030--Hb_114250_010 Hb_002897_020 Hb_002897_020 Hb_115513_030--Hb_002897_020 Hb_114674_010 Hb_114674_010 Hb_115513_030--Hb_114674_010 Hb_000819_020 Hb_000819_020 Hb_115513_030--Hb_000819_020 Hb_008203_020 Hb_008203_020 Hb_115513_030--Hb_008203_020 Hb_000836_180 Hb_000836_180 Hb_115513_030--Hb_000836_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0152198 0.042579 0.0480308 0.0185131 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis