Hb_000589_370

Information

Type transcription factor
Description TF Family: LOB
Location Contig589: 327889-328661
Sequence    

Annotation

kegg
ID rcu:RCOM_1480320
description LOB domain-containing protein, putative
nr
ID XP_012091407.1
description PREDICTED: LOB domain-containing protein 33 [Jatropha curcas]
swissprot
ID Q9LHS8
description LOB domain-containing protein 33 OS=Arabidopsis thaliana GN=LBD33 PE=2 SV=1
trembl
ID A0A067LJS2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01420 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000589_370 0.0 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 33 [Jatropha curcas]
2 Hb_003292_060 0.1016543452 - - PREDICTED: transcription factor HBP-1b(c38) [Jatropha curcas]
3 Hb_002234_230 0.1265031913 - - hypothetical protein JCGZ_26141 [Jatropha curcas]
4 Hb_004117_250 0.1383309385 - - PREDICTED: expansin-A8-like [Populus euphratica]
5 Hb_004524_060 0.1544871313 - - hypothetical protein VITISV_039334 [Vitis vinifera]
6 Hb_021650_050 0.2212854071 - - hypothetical protein RCOM_0852210 [Ricinus communis]
7 Hb_004524_070 0.2309553019 - - PREDICTED: uncharacterized protein LOC105634656 [Jatropha curcas]
8 Hb_000787_010 0.2392188611 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
9 Hb_001124_030 0.2433850626 - - hypothetical protein PRUPE_ppa023969mg, partial [Prunus persica]
10 Hb_099990_030 0.2748295381 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
11 Hb_028639_040 0.282479719 - - PREDICTED: uncharacterized protein LOC105761689 [Gossypium raimondii]
12 Hb_003768_060 0.2854326442 - - PREDICTED: transcription initiation factor IIB-like [Jatropha curcas]
13 Hb_049884_010 0.3109751034 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
14 Hb_004968_010 0.3249565246 - - PREDICTED: receptor-like protein 12 isoform X1 [Populus euphratica]
15 Hb_004021_090 0.3318760164 - - hypothetical protein JCGZ_09233 [Jatropha curcas]
16 Hb_002235_180 0.3402071843 transcription factor TF Family: ERF PREDICTED: uncharacterized protein LOC105133481 [Populus euphratica]
17 Hb_002447_160 0.3453481905 - - -
18 Hb_009302_010 0.3493942741 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
19 Hb_004800_210 0.3495313787 - - hypothetical protein POPTR_0007s12780g [Populus trichocarpa]
20 Hb_001004_050 0.3504431394 - - PREDICTED: uncharacterized protein LOC103335231 [Prunus mume]

Gene co-expression network

sample Hb_000589_370 Hb_000589_370 Hb_003292_060 Hb_003292_060 Hb_000589_370--Hb_003292_060 Hb_002234_230 Hb_002234_230 Hb_000589_370--Hb_002234_230 Hb_004117_250 Hb_004117_250 Hb_000589_370--Hb_004117_250 Hb_004524_060 Hb_004524_060 Hb_000589_370--Hb_004524_060 Hb_021650_050 Hb_021650_050 Hb_000589_370--Hb_021650_050 Hb_004524_070 Hb_004524_070 Hb_000589_370--Hb_004524_070 Hb_003292_060--Hb_002234_230 Hb_001124_030 Hb_001124_030 Hb_003292_060--Hb_001124_030 Hb_003292_060--Hb_004117_250 Hb_003292_060--Hb_004524_060 Hb_000787_010 Hb_000787_010 Hb_003292_060--Hb_000787_010 Hb_002234_230--Hb_001124_030 Hb_002234_230--Hb_021650_050 Hb_002234_230--Hb_004117_250 Hb_002234_230--Hb_004524_070 Hb_004117_250--Hb_004524_060 Hb_002897_020 Hb_002897_020 Hb_004117_250--Hb_002897_020 Hb_004117_250--Hb_000787_010 Hb_049884_010 Hb_049884_010 Hb_004117_250--Hb_049884_010 Hb_028639_040 Hb_028639_040 Hb_004524_060--Hb_028639_040 Hb_004524_060--Hb_002897_020 Hb_004524_060--Hb_021650_050 Hb_075351_010 Hb_075351_010 Hb_021650_050--Hb_075351_010 Hb_021650_050--Hb_004117_250 Hb_021650_050--Hb_003292_060 Hb_099990_030 Hb_099990_030 Hb_004524_070--Hb_099990_030 Hb_113823_010 Hb_113823_010 Hb_004524_070--Hb_113823_010 Hb_167508_010 Hb_167508_010 Hb_004524_070--Hb_167508_010 Hb_004524_070--Hb_003292_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.112543 0.094981 0.149183 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis