Hb_021650_050

Information

Type -
Description -
Location Contig21650: 30353-31623
Sequence    

Annotation

kegg
ID rcu:RCOM_0852210
description hypothetical protein
nr
ID XP_002517393.1
description hypothetical protein RCOM_0852210 [Ricinus communis]
swissprot
ID Q8GWK5
description Gibberellin-regulated protein 9 OS=Arabidopsis thaliana GN=GASA9 PE=2 SV=1
trembl
ID B9RUE8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0852210 PE=4 SV=1
Gene Ontology
ID GO:0003824
description gibberellin-regulated protein 14-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22385: 26388-29487
cDNA
(Sanger)
(ID:Location)		 025_C19.ab1: 26390-29441 , 047_N14.ab1: 26390-29442

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021650_050 0.0 - - hypothetical protein RCOM_0852210 [Ricinus communis]
2 Hb_000589_370 0.2212854071 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 33 [Jatropha curcas]
3 Hb_075351_010 0.2492151306 - - PREDICTED: uncharacterized protein LOC104907573 [Beta vulgaris subsp. vulgaris]
4 Hb_004524_060 0.2533846334 - - hypothetical protein VITISV_039334 [Vitis vinifera]
5 Hb_002234_230 0.2565172154 - - hypothetical protein JCGZ_26141 [Jatropha curcas]
6 Hb_004117_250 0.268825087 - - PREDICTED: expansin-A8-like [Populus euphratica]
7 Hb_003292_060 0.2770472295 - - PREDICTED: transcription factor HBP-1b(c38) [Jatropha curcas]
8 Hb_001004_050 0.2918571147 - - PREDICTED: uncharacterized protein LOC103335231 [Prunus mume]
9 Hb_004524_070 0.3026643091 - - PREDICTED: uncharacterized protein LOC105634656 [Jatropha curcas]
10 Hb_028639_040 0.3074655914 - - PREDICTED: uncharacterized protein LOC105761689 [Gossypium raimondii]
11 Hb_002447_160 0.3117755498 - - -
12 Hb_000787_010 0.328629936 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
13 Hb_002450_160 0.3299550606 - - PREDICTED: protein 108 [Jatropha curcas]
14 Hb_001146_090 0.3318133772 - - valacyclovir hydrolase, putative [Ricinus communis]
15 Hb_030545_040 0.3391461356 - - -
16 Hb_000858_040 0.3402748747 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
17 Hb_003768_060 0.3402972176 - - PREDICTED: transcription initiation factor IIB-like [Jatropha curcas]
18 Hb_002874_210 0.3493744649 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004800_210 0.3511936571 - - hypothetical protein POPTR_0007s12780g [Populus trichocarpa]
20 Hb_123475_020 0.3512598678 - - -

Gene co-expression network

sample Hb_021650_050 Hb_021650_050 Hb_000589_370 Hb_000589_370 Hb_021650_050--Hb_000589_370 Hb_075351_010 Hb_075351_010 Hb_021650_050--Hb_075351_010 Hb_004524_060 Hb_004524_060 Hb_021650_050--Hb_004524_060 Hb_002234_230 Hb_002234_230 Hb_021650_050--Hb_002234_230 Hb_004117_250 Hb_004117_250 Hb_021650_050--Hb_004117_250 Hb_003292_060 Hb_003292_060 Hb_021650_050--Hb_003292_060 Hb_000589_370--Hb_003292_060 Hb_000589_370--Hb_002234_230 Hb_000589_370--Hb_004117_250 Hb_000589_370--Hb_004524_060 Hb_004524_070 Hb_004524_070 Hb_000589_370--Hb_004524_070 Hb_030545_040 Hb_030545_040 Hb_075351_010--Hb_030545_040 Hb_012052_030 Hb_012052_030 Hb_075351_010--Hb_012052_030 Hb_022593_030 Hb_022593_030 Hb_075351_010--Hb_022593_030 Hb_001673_110 Hb_001673_110 Hb_075351_010--Hb_001673_110 Hb_000521_310 Hb_000521_310 Hb_075351_010--Hb_000521_310 Hb_004524_060--Hb_004117_250 Hb_004524_060--Hb_003292_060 Hb_028639_040 Hb_028639_040 Hb_004524_060--Hb_028639_040 Hb_002897_020 Hb_002897_020 Hb_004524_060--Hb_002897_020 Hb_002234_230--Hb_003292_060 Hb_001124_030 Hb_001124_030 Hb_002234_230--Hb_001124_030 Hb_002234_230--Hb_004117_250 Hb_002234_230--Hb_004524_070 Hb_004117_250--Hb_003292_060 Hb_004117_250--Hb_002897_020 Hb_000787_010 Hb_000787_010 Hb_004117_250--Hb_000787_010 Hb_049884_010 Hb_049884_010 Hb_004117_250--Hb_049884_010 Hb_003292_060--Hb_001124_030 Hb_003292_060--Hb_000787_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0985917 0.0658647 0.182941 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0289633 0

CAGE analysis