Hb_001673_110

Information

Type -
Description -
Location Contig1673: 142659-143186
Sequence    

Annotation

kegg
ID pxb:103940432
description RING-H2 finger protein ATL70-like
nr
ID XP_009348829.1
description PREDICTED: RING-H2 finger protein ATL70-like [Pyrus x bretschneideri]
swissprot
ID Q9FG21
description Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana GN=ATL71 PE=3 SV=1
trembl
ID A0A067KIY4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08736 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ring-h2 finger protein atl70-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001673_110 0.0 - - PREDICTED: RING-H2 finger protein ATL70-like [Pyrus x bretschneideri]
2 Hb_000035_300 0.1991015015 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000878_150 0.2048201443 - - Gibberellin receptor GID1, putative [Ricinus communis]
4 Hb_003752_130 0.2091220518 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
5 Hb_012702_020 0.2150617682 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
6 Hb_000291_020 0.2181796882 - - hypothetical protein POPTR_0019s06080g [Populus trichocarpa]
7 Hb_015912_010 0.220839373 - - cytochrome P450, putative [Ricinus communis]
8 Hb_002787_100 0.2217227848 - - PREDICTED: uncharacterized protein LOC105637209 [Jatropha curcas]
9 Hb_000101_060 0.2285766539 - - -
10 Hb_007441_060 0.2290923232 - - -
11 Hb_008111_020 0.2321545326 - - Receptor like protein 6, putative [Theobroma cacao]
12 Hb_124207_010 0.2324543733 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_166257_010 0.2333408617 - - hypothetical protein JCGZ_21808 [Jatropha curcas]
14 Hb_002481_070 0.2357908612 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
15 Hb_000523_060 0.2460518896 - - -
16 Hb_007773_030 0.2462490706 - - -
17 Hb_000408_010 0.2484590697 - - PREDICTED: oxysterol-binding protein-related protein 4B [Jatropha curcas]
18 Hb_002157_180 0.2517746842 - - separase, putative [Ricinus communis]
19 Hb_000512_080 0.2559521515 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_008225_100 0.2572228434 - - -

Gene co-expression network

sample Hb_001673_110 Hb_001673_110 Hb_000035_300 Hb_000035_300 Hb_001673_110--Hb_000035_300 Hb_000878_150 Hb_000878_150 Hb_001673_110--Hb_000878_150 Hb_003752_130 Hb_003752_130 Hb_001673_110--Hb_003752_130 Hb_012702_020 Hb_012702_020 Hb_001673_110--Hb_012702_020 Hb_000291_020 Hb_000291_020 Hb_001673_110--Hb_000291_020 Hb_015912_010 Hb_015912_010 Hb_001673_110--Hb_015912_010 Hb_000512_080 Hb_000512_080 Hb_000035_300--Hb_000512_080 Hb_000035_300--Hb_015912_010 Hb_000035_300--Hb_000291_020 Hb_001481_030 Hb_001481_030 Hb_000035_300--Hb_001481_030 Hb_002787_100 Hb_002787_100 Hb_000035_300--Hb_002787_100 Hb_005306_040 Hb_005306_040 Hb_000035_300--Hb_005306_040 Hb_000523_060 Hb_000523_060 Hb_000878_150--Hb_000523_060 Hb_000878_150--Hb_002787_100 Hb_000878_150--Hb_000291_020 Hb_124207_010 Hb_124207_010 Hb_000878_150--Hb_124207_010 Hb_000510_350 Hb_000510_350 Hb_000878_150--Hb_000510_350 Hb_002481_070 Hb_002481_070 Hb_000878_150--Hb_002481_070 Hb_003752_130--Hb_012702_020 Hb_008111_020 Hb_008111_020 Hb_003752_130--Hb_008111_020 Hb_003752_130--Hb_015912_010 Hb_002157_180 Hb_002157_180 Hb_003752_130--Hb_002157_180 Hb_000101_060 Hb_000101_060 Hb_003752_130--Hb_000101_060 Hb_003752_130--Hb_000291_020 Hb_012702_020--Hb_000101_060 Hb_012702_020--Hb_015912_010 Hb_012702_020--Hb_008111_020 Hb_012702_020--Hb_002157_180 Hb_166257_010 Hb_166257_010 Hb_012702_020--Hb_166257_010 Hb_000291_020--Hb_002787_100 Hb_000291_020--Hb_124207_010 Hb_000291_020--Hb_000523_060 Hb_012553_010 Hb_012553_010 Hb_000291_020--Hb_012553_010 Hb_000291_020--Hb_166257_010 Hb_000291_020--Hb_002481_070 Hb_015912_010--Hb_000101_060 Hb_002400_250 Hb_002400_250 Hb_015912_010--Hb_002400_250 Hb_015912_010--Hb_166257_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0526383 0.324209 0.0860901 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.199766 0

CAGE analysis