Hb_000521_310

Information

Type -
Description -
Location Contig521: 215698-223488
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000521_310 0.0 - - -
2 Hb_005147_050 0.1936740929 - - PREDICTED: ankyrin-2-like [Citrus sinensis]
3 Hb_001140_340 0.2493255518 - - -
4 Hb_009913_010 0.259645189 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
5 Hb_029475_010 0.2637308876 - - conserved hypothetical protein [Ricinus communis]
6 Hb_022593_030 0.2758822318 - - polyprotein [Citrus endogenous pararetrovirus]
7 Hb_018616_030 0.2808144401 - - hypothetical protein B456_008G198600 [Gossypium raimondii]
8 Hb_000329_640 0.2863648115 - - -
9 Hb_007441_060 0.2964746534 - - -
10 Hb_006711_050 0.2978622414 - - PREDICTED: putative germin-like protein 2-1 [Jatropha curcas]
11 Hb_012702_030 0.2999280128 - - hypothetical protein POPTR_0077s002001g, partial [Populus trichocarpa]
12 Hb_030545_040 0.3001325211 - - -
13 Hb_003947_010 0.3031690724 - - hypothetical protein JCGZ_24829 [Jatropha curcas]
14 Hb_001122_010 0.3032332478 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
15 Hb_178817_010 0.3064716528 - - protease [Gossypium hirsutum]
16 Hb_007885_080 0.3071283046 - - PREDICTED: uncharacterized protein LOC105645857 isoform X1 [Jatropha curcas]
17 Hb_027506_050 0.3132662007 - - -
18 Hb_003673_030 0.3133791259 - - hypothetical protein POPTR_0011s11940g [Populus trichocarpa]
19 Hb_000190_100 0.3168153049 transcription factor TF Family: C2H2 hypothetical protein POPTR_0002s04880g [Populus trichocarpa]
20 Hb_075351_010 0.320006142 - - PREDICTED: uncharacterized protein LOC104907573 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_000521_310 Hb_000521_310 Hb_005147_050 Hb_005147_050 Hb_000521_310--Hb_005147_050 Hb_001140_340 Hb_001140_340 Hb_000521_310--Hb_001140_340 Hb_009913_010 Hb_009913_010 Hb_000521_310--Hb_009913_010 Hb_029475_010 Hb_029475_010 Hb_000521_310--Hb_029475_010 Hb_022593_030 Hb_022593_030 Hb_000521_310--Hb_022593_030 Hb_018616_030 Hb_018616_030 Hb_000521_310--Hb_018616_030 Hb_005147_050--Hb_009913_010 Hb_007885_080 Hb_007885_080 Hb_005147_050--Hb_007885_080 Hb_001122_010 Hb_001122_010 Hb_005147_050--Hb_001122_010 Hb_005147_050--Hb_022593_030 Hb_007441_060 Hb_007441_060 Hb_005147_050--Hb_007441_060 Hb_001140_340--Hb_029475_010 Hb_000329_640 Hb_000329_640 Hb_001140_340--Hb_000329_640 Hb_006711_050 Hb_006711_050 Hb_001140_340--Hb_006711_050 Hb_178817_010 Hb_178817_010 Hb_001140_340--Hb_178817_010 Hb_012702_030 Hb_012702_030 Hb_001140_340--Hb_012702_030 Hb_003673_030 Hb_003673_030 Hb_001140_340--Hb_003673_030 Hb_009913_010--Hb_001122_010 Hb_000083_130 Hb_000083_130 Hb_009913_010--Hb_000083_130 Hb_001103_040 Hb_001103_040 Hb_009913_010--Hb_001103_040 Hb_010270_010 Hb_010270_010 Hb_009913_010--Hb_010270_010 Hb_001091_030 Hb_001091_030 Hb_009913_010--Hb_001091_030 Hb_029475_010--Hb_178817_010 Hb_029475_010--Hb_006711_050 Hb_029475_010--Hb_003673_030 Hb_029475_010--Hb_012702_030 Hb_029475_010--Hb_000329_640 Hb_001369_560 Hb_001369_560 Hb_022593_030--Hb_001369_560 Hb_010423_010 Hb_010423_010 Hb_022593_030--Hb_010423_010 Hb_003442_010 Hb_003442_010 Hb_022593_030--Hb_003442_010 Hb_022593_030--Hb_009913_010 Hb_022593_030--Hb_007441_060 Hb_001140_230 Hb_001140_230 Hb_018616_030--Hb_001140_230 Hb_018616_030--Hb_001140_340 Hb_000733_110 Hb_000733_110 Hb_018616_030--Hb_000733_110 Hb_018616_030--Hb_029475_010 Hb_003947_010 Hb_003947_010 Hb_018616_030--Hb_003947_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.13781 0.12807 0.0155669 0.0165826 0 0.0173357
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.113788 0

CAGE analysis