Hb_003947_010

Information

Type -
Description -
Location Contig3947: 7878-8322
Sequence    

Annotation

kegg
ID vvi:100248142
description uncharacterized LOC100248142
nr
ID KDP40830.1
description hypothetical protein JCGZ_24829 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L8K7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24829 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003947_010 0.0 - - hypothetical protein JCGZ_24829 [Jatropha curcas]
2 Hb_000329_640 0.1820669647 - - -
3 Hb_001140_340 0.2143576929 - - -
4 Hb_012702_030 0.2383257498 - - hypothetical protein POPTR_0077s002001g, partial [Populus trichocarpa]
5 Hb_029475_010 0.24457243 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002760_030 0.2479092685 transcription factor TF Family: PLATZ hypothetical protein JCGZ_16980 [Jatropha curcas]
7 Hb_006711_050 0.249265954 - - PREDICTED: putative germin-like protein 2-1 [Jatropha curcas]
8 Hb_030399_010 0.2497624445 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
9 Hb_018616_030 0.259359067 - - hypothetical protein B456_008G198600 [Gossypium raimondii]
10 Hb_001211_020 0.2834343037 transcription factor TF Family: MYB hypothetical protein POPTR_0002s11440g [Populus trichocarpa]
11 Hb_001545_220 0.2891538431 - - hypothetical protein POPTR_0002s06170g [Populus trichocarpa]
12 Hb_001205_020 0.2902133003 - - -
13 Hb_005622_080 0.2954270094 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
14 Hb_001073_020 0.2997512304 - - hypothetical protein CISIN_1g031854mg [Citrus sinensis]
15 Hb_003052_200 0.3030563981 - - hypothetical protein POPTR_0010s14360g [Populus trichocarpa]
16 Hb_000521_310 0.3031690724 - - -
17 Hb_002677_010 0.3049630416 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2 [Populus euphratica]
18 Hb_000908_010 0.3091136024 - - Disease resistance protein RGA2, putative [Ricinus communis]
19 Hb_032582_010 0.3092545681 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
20 Hb_007729_010 0.3104362178 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_003947_010 Hb_003947_010 Hb_000329_640 Hb_000329_640 Hb_003947_010--Hb_000329_640 Hb_001140_340 Hb_001140_340 Hb_003947_010--Hb_001140_340 Hb_012702_030 Hb_012702_030 Hb_003947_010--Hb_012702_030 Hb_029475_010 Hb_029475_010 Hb_003947_010--Hb_029475_010 Hb_002760_030 Hb_002760_030 Hb_003947_010--Hb_002760_030 Hb_006711_050 Hb_006711_050 Hb_003947_010--Hb_006711_050 Hb_000329_640--Hb_012702_030 Hb_000329_640--Hb_006711_050 Hb_030399_010 Hb_030399_010 Hb_000329_640--Hb_030399_010 Hb_000329_640--Hb_029475_010 Hb_000329_640--Hb_001140_340 Hb_003673_030 Hb_003673_030 Hb_000329_640--Hb_003673_030 Hb_001140_340--Hb_029475_010 Hb_001140_340--Hb_006711_050 Hb_178817_010 Hb_178817_010 Hb_001140_340--Hb_178817_010 Hb_001140_340--Hb_012702_030 Hb_001140_340--Hb_003673_030 Hb_012702_030--Hb_006711_050 Hb_012702_030--Hb_003673_030 Hb_012702_030--Hb_029475_010 Hb_012702_030--Hb_030399_010 Hb_012702_030--Hb_178817_010 Hb_029475_010--Hb_178817_010 Hb_029475_010--Hb_006711_050 Hb_029475_010--Hb_003673_030 Hb_007729_010 Hb_007729_010 Hb_002760_030--Hb_007729_010 Hb_021901_010 Hb_021901_010 Hb_002760_030--Hb_021901_010 Hb_001545_220 Hb_001545_220 Hb_002760_030--Hb_001545_220 Hb_001269_020 Hb_001269_020 Hb_002760_030--Hb_001269_020 Hb_002677_010 Hb_002677_010 Hb_002760_030--Hb_002677_010 Hb_001073_020 Hb_001073_020 Hb_002760_030--Hb_001073_020 Hb_006711_050--Hb_003673_030 Hb_006711_050--Hb_178817_010 Hb_006711_050--Hb_030399_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.106407 0.190309 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.263897 0

CAGE analysis