Hb_007729_010

Information

Type -
Description -
Location Contig7729: 1411-2238
Sequence    

Annotation

kegg
ID vvi:100261705
description (-)-alpha-terpineol synthase
nr
ID CBI40170.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q93X23
description Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1
trembl
ID D7UBQ6
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0067g03770 PE=4 SV=1
Gene Ontology
ID GO:0009507
description terpene synthase 10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007729_010 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000856_350 0.0908189065 transcription factor TF Family: WRKY WRKY transcription factor 36 [Jatropha curcas]
3 Hb_002677_010 0.1044031281 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2 [Populus euphratica]
4 Hb_181092_010 0.1151764782 - - unnamed protein product [Vitis vinifera]
5 Hb_032582_010 0.1166499135 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
6 Hb_001269_020 0.1248352131 - - PREDICTED: beta-Amyrin Synthase 2-like [Vitis vinifera]
7 Hb_006198_150 0.1256190238 - - -
8 Hb_000185_060 0.1274949158 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
9 Hb_002986_110 0.1320405416 - - PREDICTED: patatin-like protein 1 [Jatropha curcas]
10 Hb_008616_020 0.1330702307 - - unnamed protein product [Vitis vinifera]
11 Hb_009083_080 0.1361041619 - - conserved hypothetical protein [Ricinus communis]
12 Hb_013654_010 0.1366345985 - - unnamed protein product [Vitis vinifera]
13 Hb_002019_030 0.1388228464 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
14 Hb_001376_040 0.1394028561 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Populus euphratica]
15 Hb_032443_030 0.1418431956 - - PREDICTED: protein SRG1-like [Jatropha curcas]
16 Hb_004656_020 0.1434798481 - - EF hand domain-containing protein, variant [Neurospora crassa OR74A]
17 Hb_156949_010 0.1451290237 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
18 Hb_008053_070 0.1459798016 - - PREDICTED: U-box domain-containing protein 33-like isoform X4 [Jatropha curcas]
19 Hb_011362_020 0.1482722157 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_032215_070 0.1491157456 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_007729_010 Hb_007729_010 Hb_000856_350 Hb_000856_350 Hb_007729_010--Hb_000856_350 Hb_002677_010 Hb_002677_010 Hb_007729_010--Hb_002677_010 Hb_181092_010 Hb_181092_010 Hb_007729_010--Hb_181092_010 Hb_032582_010 Hb_032582_010 Hb_007729_010--Hb_032582_010 Hb_001269_020 Hb_001269_020 Hb_007729_010--Hb_001269_020 Hb_006198_150 Hb_006198_150 Hb_007729_010--Hb_006198_150 Hb_000856_350--Hb_181092_010 Hb_156949_010 Hb_156949_010 Hb_000856_350--Hb_156949_010 Hb_002986_110 Hb_002986_110 Hb_000856_350--Hb_002986_110 Hb_013654_010 Hb_013654_010 Hb_000856_350--Hb_013654_010 Hb_000856_350--Hb_032582_010 Hb_002677_010--Hb_032582_010 Hb_008616_020 Hb_008616_020 Hb_002677_010--Hb_008616_020 Hb_000185_060 Hb_000185_060 Hb_002677_010--Hb_000185_060 Hb_002677_010--Hb_181092_010 Hb_002677_010--Hb_002986_110 Hb_008053_070 Hb_008053_070 Hb_002677_010--Hb_008053_070 Hb_181092_010--Hb_156949_010 Hb_181092_010--Hb_002986_110 Hb_181092_010--Hb_000185_060 Hb_181092_010--Hb_013654_010 Hb_032582_010--Hb_008616_020 Hb_032582_010--Hb_002986_110 Hb_032582_010--Hb_013654_010 Hb_000905_030 Hb_000905_030 Hb_032582_010--Hb_000905_030 Hb_032582_010--Hb_000185_060 Hb_001269_020--Hb_181092_010 Hb_001269_020--Hb_002677_010 Hb_001269_020--Hb_000185_060 Hb_001269_020--Hb_156949_010 Hb_001269_020--Hb_032582_010 Hb_001269_020--Hb_000856_350 Hb_017987_040 Hb_017987_040 Hb_006198_150--Hb_017987_040 Hb_002019_030 Hb_002019_030 Hb_006198_150--Hb_002019_030 Hb_000836_510 Hb_000836_510 Hb_006198_150--Hb_000836_510 Hb_006198_150--Hb_000185_060 Hb_006198_150--Hb_000856_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0415465 2.08344 0 0.0864294 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0760653 0 0 2.38005 0

CAGE analysis