Hb_000836_510

Information

Type -
Description -
Location Contig836: 430853-431512
Sequence    

Annotation

kegg
ID rcu:RCOM_1616750
description hypothetical protein
nr
ID XP_002511928.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RDY9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1616750 PE=4 SV=1
Gene Ontology
ID GO:0005886
description late embryogenesis abundant hydroxyproline-rich glycoprotein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_510 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_011362_020 0.1309915284 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_006198_150 0.1494822404 - - -
4 Hb_017987_040 0.1648209522 transcription factor TF Family: MYB hypothetical protein POPTR_0002s11440g [Populus trichocarpa]
5 Hb_000856_350 0.1674955524 transcription factor TF Family: WRKY WRKY transcription factor 36 [Jatropha curcas]
6 Hb_007729_010 0.1677247479 - - unnamed protein product [Vitis vinifera]
7 Hb_002005_010 0.1684190046 transcription factor TF Family: MYB PREDICTED: transcription factor MYB39-like isoform X2 [Populus euphratica]
8 Hb_008214_010 0.1686776928 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
9 Hb_008052_020 0.1687131231 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Brassica rapa]
10 Hb_032920_080 0.1699551046 - - PREDICTED: uncharacterized protein LOC104602705 [Nelumbo nucifera]
11 Hb_001814_090 0.1702666908 - - PREDICTED: uncharacterized protein LOC105636644 [Jatropha curcas]
12 Hb_060245_010 0.1703302133 - - -
13 Hb_032215_070 0.1705178888 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_001476_010 0.1705364358 - - hypothetical protein JCGZ_15669 [Jatropha curcas]
15 Hb_012120_010 0.1706153813 - - -
16 Hb_140406_010 0.1706519854 - - hypothetical protein JCGZ_19461 [Jatropha curcas]
17 Hb_051719_020 0.170800805 - - PREDICTED: toll/interleukin-1 receptor-like protein [Jatropha curcas]
18 Hb_027556_030 0.1709662417 - - PREDICTED: pleiotropic drug resistance protein 1-like, partial [Gossypium raimondii]
19 Hb_001427_130 0.1709872748 - - PREDICTED: uncharacterized protein LOC101510272 [Cicer arietinum]
20 Hb_001611_030 0.171060142 - - -

Gene co-expression network

sample Hb_000836_510 Hb_000836_510 Hb_011362_020 Hb_011362_020 Hb_000836_510--Hb_011362_020 Hb_006198_150 Hb_006198_150 Hb_000836_510--Hb_006198_150 Hb_017987_040 Hb_017987_040 Hb_000836_510--Hb_017987_040 Hb_000856_350 Hb_000856_350 Hb_000836_510--Hb_000856_350 Hb_007729_010 Hb_007729_010 Hb_000836_510--Hb_007729_010 Hb_002005_010 Hb_002005_010 Hb_000836_510--Hb_002005_010 Hb_032443_030 Hb_032443_030 Hb_011362_020--Hb_032443_030 Hb_002986_110 Hb_002986_110 Hb_011362_020--Hb_002986_110 Hb_013654_010 Hb_013654_010 Hb_011362_020--Hb_013654_010 Hb_032920_080 Hb_032920_080 Hb_011362_020--Hb_032920_080 Hb_001814_090 Hb_001814_090 Hb_011362_020--Hb_001814_090 Hb_060245_010 Hb_060245_010 Hb_011362_020--Hb_060245_010 Hb_006198_150--Hb_017987_040 Hb_006198_150--Hb_007729_010 Hb_002019_030 Hb_002019_030 Hb_006198_150--Hb_002019_030 Hb_000185_060 Hb_000185_060 Hb_006198_150--Hb_000185_060 Hb_006198_150--Hb_000856_350 Hb_005000_220 Hb_005000_220 Hb_017987_040--Hb_005000_220 Hb_001489_030 Hb_001489_030 Hb_017987_040--Hb_001489_030 Hb_008503_020 Hb_008503_020 Hb_017987_040--Hb_008503_020 Hb_007666_040 Hb_007666_040 Hb_017987_040--Hb_007666_040 Hb_008053_070 Hb_008053_070 Hb_017987_040--Hb_008053_070 Hb_181092_010 Hb_181092_010 Hb_000856_350--Hb_181092_010 Hb_156949_010 Hb_156949_010 Hb_000856_350--Hb_156949_010 Hb_000856_350--Hb_007729_010 Hb_000856_350--Hb_002986_110 Hb_000856_350--Hb_013654_010 Hb_032582_010 Hb_032582_010 Hb_000856_350--Hb_032582_010 Hb_002677_010 Hb_002677_010 Hb_007729_010--Hb_002677_010 Hb_007729_010--Hb_181092_010 Hb_007729_010--Hb_032582_010 Hb_001269_020 Hb_001269_020 Hb_007729_010--Hb_001269_020 Hb_008214_010 Hb_008214_010 Hb_002005_010--Hb_008214_010 Hb_008052_020 Hb_008052_020 Hb_002005_010--Hb_008052_020 Hb_032215_070 Hb_032215_070 Hb_002005_010--Hb_032215_070 Hb_001427_130 Hb_001427_130 Hb_002005_010--Hb_001427_130 Hb_002005_010--Hb_032920_080 Hb_002005_010--Hb_013654_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.3187 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0878946 0.0690903 0 1.35302 0

CAGE analysis