Hb_001269_020

Information

Type -
Description -
Location Contig1269: 19408-26980
Sequence    

Annotation

kegg
ID vvi:100261496
description beta-Amyrin Synthase 2-like
nr
ID XP_003632933.2
description PREDICTED: beta-Amyrin Synthase 2-like [Vitis vinifera]
swissprot
ID Q2XPU7
description Lupeol synthase OS=Ricinus communis PE=1 SV=1
trembl
ID B9SMW8
description Terpene cyclase/mutase family member OS=Ricinus communis GN=RCOM_0472110 PE=3 SV=1
Gene Ontology
ID GO:0042299
description beta-amyrin synthase 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_020 0.0 - - PREDICTED: beta-Amyrin Synthase 2-like [Vitis vinifera]
2 Hb_181092_010 0.0848632911 - - unnamed protein product [Vitis vinifera]
3 Hb_002677_010 0.0943252217 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2 [Populus euphratica]
4 Hb_000185_060 0.0948719625 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
5 Hb_156949_010 0.1019135429 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
6 Hb_032582_010 0.1035699069 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
7 Hb_000856_350 0.1056290883 transcription factor TF Family: WRKY WRKY transcription factor 36 [Jatropha curcas]
8 Hb_004109_300 0.1158516901 - - hypothetical protein POPTR_0003s21800g [Populus trichocarpa]
9 Hb_125876_010 0.1158777116 - - unnamed protein product [Vitis vinifera]
10 Hb_000380_040 0.1169854387 - - bel1 homeotic protein, putative [Ricinus communis]
11 Hb_005550_070 0.1180096786 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Populus euphratica]
12 Hb_008616_020 0.1202042841 - - unnamed protein product [Vitis vinifera]
13 Hb_002986_110 0.1213372891 - - PREDICTED: patatin-like protein 1 [Jatropha curcas]
14 Hb_013654_010 0.1239176194 - - unnamed protein product [Vitis vinifera]
15 Hb_002603_020 0.124184139 - - PREDICTED: O-acetyl-ADP-ribose deacetylase MACROD2-like isoform X1 [Jatropha curcas]
16 Hb_005846_010 0.1242669007 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]
17 Hb_007729_010 0.1248352131 - - unnamed protein product [Vitis vinifera]
18 Hb_006711_010 0.1248729317 - - cytoplasmic dynein light chain, putative [Ricinus communis]
19 Hb_000236_360 0.1261726908 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Prunus mume]
20 Hb_010839_020 0.1290218835 - - -

Gene co-expression network

sample Hb_001269_020 Hb_001269_020 Hb_181092_010 Hb_181092_010 Hb_001269_020--Hb_181092_010 Hb_002677_010 Hb_002677_010 Hb_001269_020--Hb_002677_010 Hb_000185_060 Hb_000185_060 Hb_001269_020--Hb_000185_060 Hb_156949_010 Hb_156949_010 Hb_001269_020--Hb_156949_010 Hb_032582_010 Hb_032582_010 Hb_001269_020--Hb_032582_010 Hb_000856_350 Hb_000856_350 Hb_001269_020--Hb_000856_350 Hb_181092_010--Hb_000856_350 Hb_181092_010--Hb_156949_010 Hb_181092_010--Hb_002677_010 Hb_002986_110 Hb_002986_110 Hb_181092_010--Hb_002986_110 Hb_181092_010--Hb_000185_060 Hb_013654_010 Hb_013654_010 Hb_181092_010--Hb_013654_010 Hb_002677_010--Hb_032582_010 Hb_008616_020 Hb_008616_020 Hb_002677_010--Hb_008616_020 Hb_002677_010--Hb_000185_060 Hb_002677_010--Hb_002986_110 Hb_008053_070 Hb_008053_070 Hb_002677_010--Hb_008053_070 Hb_000185_060--Hb_008616_020 Hb_000185_060--Hb_032582_010 Hb_000185_060--Hb_008053_070 Hb_001376_040 Hb_001376_040 Hb_000185_060--Hb_001376_040 Hb_002603_020 Hb_002603_020 Hb_156949_010--Hb_002603_020 Hb_125876_010 Hb_125876_010 Hb_156949_010--Hb_125876_010 Hb_005846_010 Hb_005846_010 Hb_156949_010--Hb_005846_010 Hb_004918_040 Hb_004918_040 Hb_156949_010--Hb_004918_040 Hb_003735_010 Hb_003735_010 Hb_156949_010--Hb_003735_010 Hb_032582_010--Hb_008616_020 Hb_032582_010--Hb_002986_110 Hb_032582_010--Hb_013654_010 Hb_000905_030 Hb_000905_030 Hb_032582_010--Hb_000905_030 Hb_000856_350--Hb_156949_010 Hb_007729_010 Hb_007729_010 Hb_000856_350--Hb_007729_010 Hb_000856_350--Hb_002986_110 Hb_000856_350--Hb_013654_010 Hb_000856_350--Hb_032582_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00911735 1.04266 0 0.0482465 0.00689278 0.00643634
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0131495 0 1.42501 0

CAGE analysis