Hb_030399_010

Information

Type -
Description -
Location Contig30399: 86-492
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_012065946.1
description PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LEG2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06545 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030399_010 0.0 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
2 Hb_031862_260 0.0656484227 - - conserved hypothetical protein [Ricinus communis]
3 Hb_012702_030 0.1176007616 - - hypothetical protein POPTR_0077s002001g, partial [Populus trichocarpa]
4 Hb_000329_640 0.1189611802 - - -
5 Hb_006711_050 0.1342535192 - - PREDICTED: putative germin-like protein 2-1 [Jatropha curcas]
6 Hb_003673_030 0.2133312662 - - hypothetical protein POPTR_0011s11940g [Populus trichocarpa]
7 Hb_029475_010 0.2241004395 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002417_030 0.2362361877 - - PREDICTED: purine permease 3-like [Jatropha curcas]
9 Hb_001545_220 0.2364874644 - - hypothetical protein POPTR_0002s06170g [Populus trichocarpa]
10 Hb_178817_010 0.2460853609 - - protease [Gossypium hirsutum]
11 Hb_003947_010 0.2497624445 - - hypothetical protein JCGZ_24829 [Jatropha curcas]
12 Hb_001140_340 0.2525035525 - - -
13 Hb_083270_010 0.2600705874 - - hypothetical protein ARALYDRAFT_896220 [Arabidopsis lyrata subsp. lyrata]
14 Hb_006198_170 0.2625695047 - - PREDICTED: serine/threonine-protein kinase At3g07070-like [Jatropha curcas]
15 Hb_000045_270 0.2685673504 - - conserved hypothetical protein [Ricinus communis]
16 Hb_010452_030 0.2685690085 transcription factor TF Family: MYB Myb domain protein 107 [Theobroma cacao]
17 Hb_001100_020 0.2685789376 - - -
18 Hb_122911_010 0.2686460124 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
19 Hb_002400_110 0.2686760535 - - conserved hypothetical protein [Ricinus communis]
20 Hb_072149_010 0.2686828562 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_030399_010 Hb_030399_010 Hb_031862_260 Hb_031862_260 Hb_030399_010--Hb_031862_260 Hb_012702_030 Hb_012702_030 Hb_030399_010--Hb_012702_030 Hb_000329_640 Hb_000329_640 Hb_030399_010--Hb_000329_640 Hb_006711_050 Hb_006711_050 Hb_030399_010--Hb_006711_050 Hb_003673_030 Hb_003673_030 Hb_030399_010--Hb_003673_030 Hb_029475_010 Hb_029475_010 Hb_030399_010--Hb_029475_010 Hb_031862_260--Hb_012702_030 Hb_031862_260--Hb_006711_050 Hb_031862_260--Hb_000329_640 Hb_083270_010 Hb_083270_010 Hb_031862_260--Hb_083270_010 Hb_006616_050 Hb_006616_050 Hb_031862_260--Hb_006616_050 Hb_012702_030--Hb_006711_050 Hb_012702_030--Hb_000329_640 Hb_012702_030--Hb_003673_030 Hb_012702_030--Hb_029475_010 Hb_178817_010 Hb_178817_010 Hb_012702_030--Hb_178817_010 Hb_000329_640--Hb_006711_050 Hb_000329_640--Hb_029475_010 Hb_001140_340 Hb_001140_340 Hb_000329_640--Hb_001140_340 Hb_000329_640--Hb_003673_030 Hb_006711_050--Hb_003673_030 Hb_006711_050--Hb_029475_010 Hb_006711_050--Hb_178817_010 Hb_003673_030--Hb_178817_010 Hb_003673_030--Hb_029475_010 Hb_003673_030--Hb_001140_340 Hb_029475_010--Hb_001140_340 Hb_029475_010--Hb_178817_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.720427 3.28993 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.24891 0

CAGE analysis