Hb_178817_010

Information

Type -
Description -
Location Contig178817: 19-504
Sequence    

Annotation

kegg
ID sly:104646341
description uncharacterized LOC104646341
nr
ID AAP80589.1
description protease [Gossypium hirsutum]
swissprot
ID -
description -
trembl
ID Q7XYF1
description Protease (Fragment) OS=Gossypium hirsutum PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_178817_010 0.0 - - protease [Gossypium hirsutum]
2 Hb_003673_030 0.0384822247 - - hypothetical protein POPTR_0011s11940g [Populus trichocarpa]
3 Hb_029475_010 0.093229423 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006711_050 0.1181744212 - - PREDICTED: putative germin-like protein 2-1 [Jatropha curcas]
5 Hb_012702_030 0.1366648989 - - hypothetical protein POPTR_0077s002001g, partial [Populus trichocarpa]
6 Hb_001140_340 0.144111981 - - -
7 Hb_011113_020 0.1740513313 - - hypothetical protein CICLE_v10018209mg [Citrus clementina]
8 Hb_000329_640 0.1773323282 - - -
9 Hb_030399_010 0.2460853609 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
10 Hb_001140_230 0.2584542095 - - -
11 Hb_123056_010 0.2607935439 - - -
12 Hb_007586_010 0.2610642598 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105126050 [Populus euphratica]
13 Hb_001703_100 0.2652188794 - - PREDICTED: uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris]
14 Hb_002269_010 0.2665613306 - - PREDICTED: WAT1-related protein At4g15540-like [Jatropha curcas]
15 Hb_031862_260 0.2672609419 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000894_050 0.2704059918 - - -
17 Hb_096257_010 0.2706034271 - - -
18 Hb_180003_010 0.2731825546 - - PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]
19 Hb_030449_010 0.2735016292 - - -
20 Hb_005269_010 0.2747373985 - - -

Gene co-expression network

sample Hb_178817_010 Hb_178817_010 Hb_003673_030 Hb_003673_030 Hb_178817_010--Hb_003673_030 Hb_029475_010 Hb_029475_010 Hb_178817_010--Hb_029475_010 Hb_006711_050 Hb_006711_050 Hb_178817_010--Hb_006711_050 Hb_012702_030 Hb_012702_030 Hb_178817_010--Hb_012702_030 Hb_001140_340 Hb_001140_340 Hb_178817_010--Hb_001140_340 Hb_011113_020 Hb_011113_020 Hb_178817_010--Hb_011113_020 Hb_003673_030--Hb_006711_050 Hb_003673_030--Hb_029475_010 Hb_003673_030--Hb_012702_030 Hb_003673_030--Hb_001140_340 Hb_000329_640 Hb_000329_640 Hb_003673_030--Hb_000329_640 Hb_029475_010--Hb_001140_340 Hb_029475_010--Hb_006711_050 Hb_029475_010--Hb_012702_030 Hb_029475_010--Hb_000329_640 Hb_006711_050--Hb_012702_030 Hb_006711_050--Hb_000329_640 Hb_030399_010 Hb_030399_010 Hb_006711_050--Hb_030399_010 Hb_012702_030--Hb_000329_640 Hb_012702_030--Hb_030399_010 Hb_001140_340--Hb_000329_640 Hb_001140_340--Hb_006711_050 Hb_001140_340--Hb_012702_030 Hb_003206_040 Hb_003206_040 Hb_011113_020--Hb_003206_040 Hb_141990_060 Hb_141990_060 Hb_011113_020--Hb_141990_060 Hb_004409_010 Hb_004409_010 Hb_011113_020--Hb_004409_010 Hb_021470_010 Hb_021470_010 Hb_011113_020--Hb_021470_010 Hb_030449_010 Hb_030449_010 Hb_011113_020--Hb_030449_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.15258 0.19709 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0517227 0

CAGE analysis