Hb_011113_020

Information

Type -
Description -
Location Contig11113: 63579-66868
Sequence    

Annotation

kegg
ID cic:CICLE_v10018209mg
description hypothetical protein
nr
ID XP_006447797.1
description hypothetical protein CICLE_v10018209mg [Citrus clementina]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID V4U510
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018209mg PE=4 SV=1
Gene Ontology
ID GO:0005515
description receptor-like protein 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011113_020 0.0 - - hypothetical protein CICLE_v10018209mg [Citrus clementina]
2 Hb_178817_010 0.1740513313 - - protease [Gossypium hirsutum]
3 Hb_003206_040 0.1791765618 - - Auxin efflux carrier component, putative [Ricinus communis]
4 Hb_141990_060 0.1794015891 - - -
5 Hb_004409_010 0.1800165608 - - -
6 Hb_021470_010 0.1811377079 - - polyprotein [Citrus endogenous pararetrovirus]
7 Hb_030449_010 0.1830452325 - - -
8 Hb_180003_010 0.1833887391 - - PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]
9 Hb_096257_010 0.1865405996 - - -
10 Hb_000894_050 0.1868127811 - - -
11 Hb_001140_230 0.2030555774 - - -
12 Hb_003673_030 0.208019215 - - hypothetical protein POPTR_0011s11940g [Populus trichocarpa]
13 Hb_007586_010 0.2118770303 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105126050 [Populus euphratica]
14 Hb_085922_010 0.2146948071 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
15 Hb_029475_010 0.2294480463 - - conserved hypothetical protein [Ricinus communis]
16 Hb_123056_010 0.239169246 - - -
17 Hb_001140_340 0.2511545771 - - -
18 Hb_000504_250 0.2560413396 - - -
19 Hb_155880_010 0.2596821929 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
20 Hb_001703_100 0.2628638523 - - PREDICTED: uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_011113_020 Hb_011113_020 Hb_178817_010 Hb_178817_010 Hb_011113_020--Hb_178817_010 Hb_003206_040 Hb_003206_040 Hb_011113_020--Hb_003206_040 Hb_141990_060 Hb_141990_060 Hb_011113_020--Hb_141990_060 Hb_004409_010 Hb_004409_010 Hb_011113_020--Hb_004409_010 Hb_021470_010 Hb_021470_010 Hb_011113_020--Hb_021470_010 Hb_030449_010 Hb_030449_010 Hb_011113_020--Hb_030449_010 Hb_003673_030 Hb_003673_030 Hb_178817_010--Hb_003673_030 Hb_029475_010 Hb_029475_010 Hb_178817_010--Hb_029475_010 Hb_006711_050 Hb_006711_050 Hb_178817_010--Hb_006711_050 Hb_012702_030 Hb_012702_030 Hb_178817_010--Hb_012702_030 Hb_001140_340 Hb_001140_340 Hb_178817_010--Hb_001140_340 Hb_003206_040--Hb_141990_060 Hb_003206_040--Hb_004409_010 Hb_003206_040--Hb_021470_010 Hb_003206_040--Hb_030449_010 Hb_180003_010 Hb_180003_010 Hb_003206_040--Hb_180003_010 Hb_096257_010 Hb_096257_010 Hb_003206_040--Hb_096257_010 Hb_141990_060--Hb_004409_010 Hb_141990_060--Hb_021470_010 Hb_141990_060--Hb_030449_010 Hb_141990_060--Hb_180003_010 Hb_141990_060--Hb_096257_010 Hb_004409_010--Hb_021470_010 Hb_004409_010--Hb_030449_010 Hb_004409_010--Hb_180003_010 Hb_004409_010--Hb_096257_010 Hb_021470_010--Hb_030449_010 Hb_021470_010--Hb_180003_010 Hb_021470_010--Hb_096257_010 Hb_030449_010--Hb_180003_010 Hb_030449_010--Hb_096257_010 Hb_000894_050 Hb_000894_050 Hb_030449_010--Hb_000894_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0903964 0.0579877 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00926728 0

CAGE analysis