Hb_003206_040

Information

Type -
Description -
Location Contig3206: 114906-117452
Sequence    

Annotation

kegg
ID rcu:RCOM_0583560
description Auxin efflux carrier component, putative
nr
ID XP_002527704.1
description Auxin efflux carrier component, putative [Ricinus communis]
swissprot
ID Q9LU77
description Auxin efflux carrier component 2 OS=Arabidopsis thaliana GN=PIN2 PE=1 SV=2
trembl
ID B9SNY5
description Auxin efflux carrier component, putative (Fragment) OS=Ricinus communis GN=RCOM_0583560 PE=4 SV=1
Gene Ontology
ID GO:0000323
description auxin efflux carrier component 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003206_040 0.0 - - Auxin efflux carrier component, putative [Ricinus communis]
2 Hb_141990_060 0.0008926335 - - -
3 Hb_004409_010 0.0032555739 - - -
4 Hb_021470_010 0.0073149804 - - polyprotein [Citrus endogenous pararetrovirus]
5 Hb_030449_010 0.0136431909 - - -
6 Hb_180003_010 0.0147197201 - - PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]
7 Hb_096257_010 0.0239126518 - - -
8 Hb_000894_050 0.0246575657 - - -
9 Hb_007586_010 0.0777407871 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105126050 [Populus euphratica]
10 Hb_123056_010 0.1215046752 - - -
11 Hb_001703_100 0.1549862592 - - PREDICTED: uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris]
12 Hb_002269_010 0.1616214151 - - PREDICTED: WAT1-related protein At4g15540-like [Jatropha curcas]
13 Hb_085922_010 0.1744054584 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
14 Hb_011113_020 0.1791765618 - - hypothetical protein CICLE_v10018209mg [Citrus clementina]
15 Hb_005269_010 0.1924782198 - - -
16 Hb_000504_250 0.2365025553 - - -
17 Hb_155880_010 0.2414344031 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
18 Hb_010531_060 0.2456034791 - - hypothetical protein B456_010G209400, partial [Gossypium raimondii]
19 Hb_178817_010 0.2778466152 - - protease [Gossypium hirsutum]
20 Hb_023024_010 0.2899619184 - - PREDICTED: uncharacterized protein LOC105767094 [Gossypium raimondii]

Gene co-expression network

sample Hb_003206_040 Hb_003206_040 Hb_141990_060 Hb_141990_060 Hb_003206_040--Hb_141990_060 Hb_004409_010 Hb_004409_010 Hb_003206_040--Hb_004409_010 Hb_021470_010 Hb_021470_010 Hb_003206_040--Hb_021470_010 Hb_030449_010 Hb_030449_010 Hb_003206_040--Hb_030449_010 Hb_180003_010 Hb_180003_010 Hb_003206_040--Hb_180003_010 Hb_096257_010 Hb_096257_010 Hb_003206_040--Hb_096257_010 Hb_141990_060--Hb_004409_010 Hb_141990_060--Hb_021470_010 Hb_141990_060--Hb_030449_010 Hb_141990_060--Hb_180003_010 Hb_141990_060--Hb_096257_010 Hb_004409_010--Hb_021470_010 Hb_004409_010--Hb_030449_010 Hb_004409_010--Hb_180003_010 Hb_004409_010--Hb_096257_010 Hb_021470_010--Hb_030449_010 Hb_021470_010--Hb_180003_010 Hb_021470_010--Hb_096257_010 Hb_030449_010--Hb_180003_010 Hb_030449_010--Hb_096257_010 Hb_000894_050 Hb_000894_050 Hb_030449_010--Hb_000894_050 Hb_180003_010--Hb_096257_010 Hb_180003_010--Hb_000894_050 Hb_096257_010--Hb_000894_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0131853 0.0105483 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis