Hb_029475_010

Information

Type -
Description -
Location Contig29475: 216-939
Sequence    

Annotation

kegg
ID rcu:RCOM_1711490
description hypothetical protein
nr
ID XP_002524154.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SDT5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1711490 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029475_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001140_340 0.0556576238 - - -
3 Hb_178817_010 0.093229423 - - protease [Gossypium hirsutum]
4 Hb_006711_050 0.0986372911 - - PREDICTED: putative germin-like protein 2-1 [Jatropha curcas]
5 Hb_003673_030 0.1022563819 - - hypothetical protein POPTR_0011s11940g [Populus trichocarpa]
6 Hb_012702_030 0.1108609935 - - hypothetical protein POPTR_0077s002001g, partial [Populus trichocarpa]
7 Hb_000329_640 0.1203717816 - - -
8 Hb_018616_030 0.2222769178 - - hypothetical protein B456_008G198600 [Gossypium raimondii]
9 Hb_030399_010 0.2241004395 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
10 Hb_011113_020 0.2294480463 - - hypothetical protein CICLE_v10018209mg [Citrus clementina]
11 Hb_001140_230 0.2346649222 - - -
12 Hb_003947_010 0.24457243 - - hypothetical protein JCGZ_24829 [Jatropha curcas]
13 Hb_000521_310 0.2637308876 - - -
14 Hb_031862_260 0.2660943815 - - conserved hypothetical protein [Ricinus communis]
15 Hb_027506_050 0.3202291584 - - -
16 Hb_000733_110 0.3263647221 - - hypothetical protein JCGZ_01360 [Jatropha curcas]
17 Hb_012753_080 0.3352665724 - - -
18 Hb_007586_010 0.3377165195 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105126050 [Populus euphratica]
19 Hb_123056_010 0.3391313737 - - -
20 Hb_000894_050 0.3426983895 - - -

Gene co-expression network

sample Hb_029475_010 Hb_029475_010 Hb_001140_340 Hb_001140_340 Hb_029475_010--Hb_001140_340 Hb_178817_010 Hb_178817_010 Hb_029475_010--Hb_178817_010 Hb_006711_050 Hb_006711_050 Hb_029475_010--Hb_006711_050 Hb_003673_030 Hb_003673_030 Hb_029475_010--Hb_003673_030 Hb_012702_030 Hb_012702_030 Hb_029475_010--Hb_012702_030 Hb_000329_640 Hb_000329_640 Hb_029475_010--Hb_000329_640 Hb_001140_340--Hb_000329_640 Hb_001140_340--Hb_006711_050 Hb_001140_340--Hb_178817_010 Hb_001140_340--Hb_012702_030 Hb_001140_340--Hb_003673_030 Hb_178817_010--Hb_003673_030 Hb_178817_010--Hb_006711_050 Hb_178817_010--Hb_012702_030 Hb_011113_020 Hb_011113_020 Hb_178817_010--Hb_011113_020 Hb_006711_050--Hb_012702_030 Hb_006711_050--Hb_000329_640 Hb_006711_050--Hb_003673_030 Hb_030399_010 Hb_030399_010 Hb_006711_050--Hb_030399_010 Hb_003673_030--Hb_012702_030 Hb_003673_030--Hb_000329_640 Hb_012702_030--Hb_000329_640 Hb_012702_030--Hb_030399_010 Hb_000329_640--Hb_030399_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0979394 0.118344 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.057531 0

CAGE analysis