Hb_000329_640

Information

Type -
Description -
Location Contig329: 484830-485090
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_640 0.0 - - -
2 Hb_012702_030 0.0576540874 - - hypothetical protein POPTR_0077s002001g, partial [Populus trichocarpa]
3 Hb_006711_050 0.0711069344 - - PREDICTED: putative germin-like protein 2-1 [Jatropha curcas]
4 Hb_030399_010 0.1189611802 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
5 Hb_029475_010 0.1203717816 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001140_340 0.1378084943 - - -
7 Hb_003673_030 0.1576076272 - - hypothetical protein POPTR_0011s11940g [Populus trichocarpa]
8 Hb_031862_260 0.1763166942 - - conserved hypothetical protein [Ricinus communis]
9 Hb_178817_010 0.1773323282 - - protease [Gossypium hirsutum]
10 Hb_003947_010 0.1820669647 - - hypothetical protein JCGZ_24829 [Jatropha curcas]
11 Hb_027506_050 0.2809032191 - - -
12 Hb_000521_310 0.2863648115 - - -
13 Hb_018616_030 0.2897530916 - - hypothetical protein B456_008G198600 [Gossypium raimondii]
14 Hb_002417_030 0.2926653097 - - PREDICTED: purine permease 3-like [Jatropha curcas]
15 Hb_001545_220 0.2972070628 - - hypothetical protein POPTR_0002s06170g [Populus trichocarpa]
16 Hb_002760_030 0.2994796642 transcription factor TF Family: PLATZ hypothetical protein JCGZ_16980 [Jatropha curcas]
17 Hb_001673_110 0.3054871675 - - PREDICTED: RING-H2 finger protein ATL70-like [Pyrus x bretschneideri]
18 Hb_007144_010 0.3216682025 - - -
19 Hb_012753_080 0.3270389381 - - -
20 Hb_001250_110 0.3302323684 transcription factor TF Family: HB hypothetical protein POPTR_0010s05340g [Populus trichocarpa]

Gene co-expression network

sample Hb_000329_640 Hb_000329_640 Hb_012702_030 Hb_012702_030 Hb_000329_640--Hb_012702_030 Hb_006711_050 Hb_006711_050 Hb_000329_640--Hb_006711_050 Hb_030399_010 Hb_030399_010 Hb_000329_640--Hb_030399_010 Hb_029475_010 Hb_029475_010 Hb_000329_640--Hb_029475_010 Hb_001140_340 Hb_001140_340 Hb_000329_640--Hb_001140_340 Hb_003673_030 Hb_003673_030 Hb_000329_640--Hb_003673_030 Hb_012702_030--Hb_006711_050 Hb_012702_030--Hb_003673_030 Hb_012702_030--Hb_029475_010 Hb_012702_030--Hb_030399_010 Hb_178817_010 Hb_178817_010 Hb_012702_030--Hb_178817_010 Hb_006711_050--Hb_003673_030 Hb_006711_050--Hb_029475_010 Hb_006711_050--Hb_178817_010 Hb_006711_050--Hb_030399_010 Hb_031862_260 Hb_031862_260 Hb_030399_010--Hb_031862_260 Hb_030399_010--Hb_003673_030 Hb_030399_010--Hb_029475_010 Hb_029475_010--Hb_001140_340 Hb_029475_010--Hb_178817_010 Hb_029475_010--Hb_003673_030 Hb_001140_340--Hb_006711_050 Hb_001140_340--Hb_178817_010 Hb_001140_340--Hb_012702_030 Hb_001140_340--Hb_003673_030 Hb_003673_030--Hb_178817_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.04708 2.28524 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.21933 0

CAGE analysis