Hb_031862_260

Information

Type -
Description -
Location Contig31862: 224360-224722
Sequence    

Annotation

kegg
ID rcu:RCOM_0885160
description hypothetical protein
nr
ID XP_002522637.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S9G8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0885160 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031862_260 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_030399_010 0.0656484227 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
3 Hb_012702_030 0.157924742 - - hypothetical protein POPTR_0077s002001g, partial [Populus trichocarpa]
4 Hb_006711_050 0.1704081702 - - PREDICTED: putative germin-like protein 2-1 [Jatropha curcas]
5 Hb_000329_640 0.1763166942 - - -
6 Hb_083270_010 0.2222764382 - - hypothetical protein ARALYDRAFT_896220 [Arabidopsis lyrata subsp. lyrata]
7 Hb_006616_050 0.2259916383 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
8 Hb_006198_170 0.2261525786 - - PREDICTED: serine/threonine-protein kinase At3g07070-like [Jatropha curcas]
9 Hb_003673_030 0.2311479761 - - hypothetical protein POPTR_0011s11940g [Populus trichocarpa]
10 Hb_002417_030 0.2381527414 - - PREDICTED: purine permease 3-like [Jatropha curcas]
11 Hb_123238_010 0.2445494053 - - hypothetical protein JCGZ_16598 [Jatropha curcas]
12 Hb_003344_020 0.2446635366 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103501197 [Cucumis melo]
13 Hb_001659_030 0.2447551921 - - -
14 Hb_007259_030 0.2447576772 - - -
15 Hb_185340_020 0.2447765211 - - -
16 Hb_080293_010 0.2451102446 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Nelumbo nucifera]
17 Hb_001271_040 0.2451132159 - - hypothetical protein POPTR_0019s039903g, partial [Populus trichocarpa]
18 Hb_008248_010 0.2454183014 - - -
19 Hb_000002_160 0.2455100556 - - Uncharacterized protein TCM_021030 [Theobroma cacao]
20 Hb_006011_060 0.2462947324 - - -

Gene co-expression network

sample Hb_031862_260 Hb_031862_260 Hb_030399_010 Hb_030399_010 Hb_031862_260--Hb_030399_010 Hb_012702_030 Hb_012702_030 Hb_031862_260--Hb_012702_030 Hb_006711_050 Hb_006711_050 Hb_031862_260--Hb_006711_050 Hb_000329_640 Hb_000329_640 Hb_031862_260--Hb_000329_640 Hb_083270_010 Hb_083270_010 Hb_031862_260--Hb_083270_010 Hb_006616_050 Hb_006616_050 Hb_031862_260--Hb_006616_050 Hb_030399_010--Hb_012702_030 Hb_030399_010--Hb_000329_640 Hb_030399_010--Hb_006711_050 Hb_003673_030 Hb_003673_030 Hb_030399_010--Hb_003673_030 Hb_029475_010 Hb_029475_010 Hb_030399_010--Hb_029475_010 Hb_012702_030--Hb_006711_050 Hb_012702_030--Hb_000329_640 Hb_012702_030--Hb_003673_030 Hb_012702_030--Hb_029475_010 Hb_178817_010 Hb_178817_010 Hb_012702_030--Hb_178817_010 Hb_006711_050--Hb_000329_640 Hb_006711_050--Hb_003673_030 Hb_006711_050--Hb_029475_010 Hb_006711_050--Hb_178817_010 Hb_000329_640--Hb_029475_010 Hb_001140_340 Hb_001140_340 Hb_000329_640--Hb_001140_340 Hb_000329_640--Hb_003673_030 Hb_008248_010 Hb_008248_010 Hb_083270_010--Hb_008248_010 Hb_185340_020 Hb_185340_020 Hb_083270_010--Hb_185340_020 Hb_007259_030 Hb_007259_030 Hb_083270_010--Hb_007259_030 Hb_006011_060 Hb_006011_060 Hb_083270_010--Hb_006011_060 Hb_003392_020 Hb_003392_020 Hb_083270_010--Hb_003392_020 Hb_003430_010 Hb_003430_010 Hb_083270_010--Hb_003430_010 Hb_064855_010 Hb_064855_010 Hb_006616_050--Hb_064855_010 Hb_000796_100 Hb_000796_100 Hb_006616_050--Hb_000796_100 Hb_000844_020 Hb_000844_020 Hb_006616_050--Hb_000844_020 Hb_001271_040 Hb_001271_040 Hb_006616_050--Hb_001271_040 Hb_066262_020 Hb_066262_020 Hb_006616_050--Hb_066262_020 Hb_006452_140 Hb_006452_140 Hb_006616_050--Hb_006452_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.101608 0.620947 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.166717 0

CAGE analysis