Hb_083270_010

Information

Type -
Description -
Location Contig83270: 378-1106
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_896220
description hypothetical protein
nr
ID XP_002882234.1
description hypothetical protein ARALYDRAFT_896220 [Arabidopsis lyrata subsp. lyrata]
swissprot
ID -
description -
trembl
ID D7KZH7
description Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_896220 PE=4 SV=1
Gene Ontology
ID GO:0004674
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_083270_010 0.0 - - hypothetical protein ARALYDRAFT_896220 [Arabidopsis lyrata subsp. lyrata]
2 Hb_008248_010 0.0513836606 - - -
3 Hb_185340_020 0.0516103569 - - -
4 Hb_007259_030 0.0516406964 - - -
5 Hb_006011_060 0.0523393899 - - -
6 Hb_003392_020 0.0524773112 - - PREDICTED: uncharacterized protein LOC105650609 [Jatropha curcas]
7 Hb_003430_010 0.0542246942 - - xyloglucan endotransglucosylase/hydrolase protein 33 precursor [Populus trichocarpa]
8 Hb_000123_320 0.0547268229 - - PREDICTED: MADS-box protein FLOWERING LOCUS C-like [Jatropha curcas]
9 Hb_006586_020 0.0576831301 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
10 Hb_001271_040 0.0597291602 - - hypothetical protein POPTR_0019s039903g, partial [Populus trichocarpa]
11 Hb_101778_020 0.0597594659 transcription factor TF Family: SRS conserved hypothetical protein [Ricinus communis]
12 Hb_123238_010 0.0629917343 - - hypothetical protein JCGZ_16598 [Jatropha curcas]
13 Hb_011924_010 0.0635572197 - - hypothetical protein, partial [Phaeodactylibacter xiamenensis]
14 Hb_003344_020 0.0641828533 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103501197 [Cucumis melo]
15 Hb_001659_030 0.0650638537 - - -
16 Hb_080293_010 0.068073947 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Nelumbo nucifera]
17 Hb_000002_160 0.0709932894 - - Uncharacterized protein TCM_021030 [Theobroma cacao]
18 Hb_068447_010 0.0717618677 - - protein with unknown function [Ricinus communis]
19 Hb_007676_070 0.0743863939 - - PREDICTED: omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1-like [Populus euphratica]
20 Hb_000764_060 0.0754505827 - - PREDICTED: uncharacterized protein LOC101491058 [Cicer arietinum]

Gene co-expression network

sample Hb_083270_010 Hb_083270_010 Hb_008248_010 Hb_008248_010 Hb_083270_010--Hb_008248_010 Hb_185340_020 Hb_185340_020 Hb_083270_010--Hb_185340_020 Hb_007259_030 Hb_007259_030 Hb_083270_010--Hb_007259_030 Hb_006011_060 Hb_006011_060 Hb_083270_010--Hb_006011_060 Hb_003392_020 Hb_003392_020 Hb_083270_010--Hb_003392_020 Hb_003430_010 Hb_003430_010 Hb_083270_010--Hb_003430_010 Hb_008248_010--Hb_185340_020 Hb_008248_010--Hb_006011_060 Hb_008248_010--Hb_007259_030 Hb_008248_010--Hb_003392_020 Hb_008248_010--Hb_003430_010 Hb_000123_320 Hb_000123_320 Hb_008248_010--Hb_000123_320 Hb_185340_020--Hb_007259_030 Hb_185340_020--Hb_006011_060 Hb_185340_020--Hb_003392_020 Hb_185340_020--Hb_003430_010 Hb_185340_020--Hb_000123_320 Hb_007259_030--Hb_006011_060 Hb_007259_030--Hb_003392_020 Hb_007259_030--Hb_003430_010 Hb_007259_030--Hb_000123_320 Hb_006011_060--Hb_003392_020 Hb_006011_060--Hb_003430_010 Hb_006011_060--Hb_000123_320 Hb_003392_020--Hb_003430_010 Hb_003392_020--Hb_000123_320 Hb_006586_020 Hb_006586_020 Hb_003392_020--Hb_006586_020 Hb_003430_010--Hb_000123_320 Hb_003430_010--Hb_006586_020 Hb_101778_020 Hb_101778_020 Hb_003430_010--Hb_101778_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.548401 104.877 0 0 0.136176 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 24.6127 0

CAGE analysis