Hb_003673_030

Information

Type -
Description -
Location Contig3673: 13420-13866
Sequence    

Annotation

kegg
ID pop:POPTR_0011s11940g
description POPTRDRAFT_235875; hypothetical protein
nr
ID XP_002316893.2
description hypothetical protein POPTR_0011s11940g [Populus trichocarpa]
swissprot
ID Q9LNN7
description Protein GRIM REAPER OS=Arabidopsis thaliana GN=GRI PE=1 SV=1
trembl
ID B9HZU0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s11940g PE=4 SV=2
Gene Ontology
ID GO:0006950
description protein grim reaper-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003673_030 0.0 - - hypothetical protein POPTR_0011s11940g [Populus trichocarpa]
2 Hb_178817_010 0.0384822247 - - protease [Gossypium hirsutum]
3 Hb_006711_050 0.0911693653 - - PREDICTED: putative germin-like protein 2-1 [Jatropha curcas]
4 Hb_029475_010 0.1022563819 - - conserved hypothetical protein [Ricinus communis]
5 Hb_012702_030 0.1093610664 - - hypothetical protein POPTR_0077s002001g, partial [Populus trichocarpa]
6 Hb_001140_340 0.1572164949 - - -
7 Hb_000329_640 0.1576076272 - - -
8 Hb_011113_020 0.208019215 - - hypothetical protein CICLE_v10018209mg [Citrus clementina]
9 Hb_030399_010 0.2133312662 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
10 Hb_031862_260 0.2311479761 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001703_100 0.263099394 - - PREDICTED: uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris]
12 Hb_002269_010 0.2634817483 - - PREDICTED: WAT1-related protein At4g15540-like [Jatropha curcas]
13 Hb_123056_010 0.2635791423 - - -
14 Hb_005269_010 0.2673231124 - - -
15 Hb_007586_010 0.2701240028 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105126050 [Populus euphratica]
16 Hb_010531_060 0.2815703573 - - hypothetical protein B456_010G209400, partial [Gossypium raimondii]
17 Hb_000894_050 0.2862714499 - - -
18 Hb_096257_010 0.2865556277 - - -
19 Hb_180003_010 0.2901831218 - - PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]
20 Hb_030449_010 0.2906222616 - - -

Gene co-expression network

sample Hb_003673_030 Hb_003673_030 Hb_178817_010 Hb_178817_010 Hb_003673_030--Hb_178817_010 Hb_006711_050 Hb_006711_050 Hb_003673_030--Hb_006711_050 Hb_029475_010 Hb_029475_010 Hb_003673_030--Hb_029475_010 Hb_012702_030 Hb_012702_030 Hb_003673_030--Hb_012702_030 Hb_001140_340 Hb_001140_340 Hb_003673_030--Hb_001140_340 Hb_000329_640 Hb_000329_640 Hb_003673_030--Hb_000329_640 Hb_178817_010--Hb_029475_010 Hb_178817_010--Hb_006711_050 Hb_178817_010--Hb_012702_030 Hb_178817_010--Hb_001140_340 Hb_011113_020 Hb_011113_020 Hb_178817_010--Hb_011113_020 Hb_006711_050--Hb_012702_030 Hb_006711_050--Hb_000329_640 Hb_006711_050--Hb_029475_010 Hb_030399_010 Hb_030399_010 Hb_006711_050--Hb_030399_010 Hb_029475_010--Hb_001140_340 Hb_029475_010--Hb_012702_030 Hb_029475_010--Hb_000329_640 Hb_012702_030--Hb_000329_640 Hb_012702_030--Hb_030399_010 Hb_001140_340--Hb_000329_640 Hb_001140_340--Hb_006711_050 Hb_001140_340--Hb_012702_030 Hb_000329_640--Hb_030399_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.137907 0.216877 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0536991 0

CAGE analysis