Hb_002760_030

Information

Type transcription factor
Description TF Family: PLATZ
Location Contig2760: 50762-52019
Sequence    

Annotation

kegg
ID rcu:RCOM_1372310
description zinc ion binding protein, putative
nr
ID KDP30198.1
description hypothetical protein JCGZ_16980 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K5B9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16980 PE=4 SV=1
Gene Ontology
ID GO:0005622
description zinc-binding family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002760_030 0.0 transcription factor TF Family: PLATZ hypothetical protein JCGZ_16980 [Jatropha curcas]
2 Hb_007729_010 0.1551102283 - - unnamed protein product [Vitis vinifera]
3 Hb_021901_010 0.1636023276 - - -
4 Hb_001545_220 0.1667155052 - - hypothetical protein POPTR_0002s06170g [Populus trichocarpa]
5 Hb_001269_020 0.179096602 - - PREDICTED: beta-Amyrin Synthase 2-like [Vitis vinifera]
6 Hb_002677_010 0.1799783694 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2 [Populus euphratica]
7 Hb_001073_020 0.1837422527 - - hypothetical protein CISIN_1g031854mg [Citrus sinensis]
8 Hb_032582_010 0.1870782957 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
9 Hb_000185_060 0.1965688304 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
10 Hb_002019_030 0.1986266564 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
11 Hb_000856_350 0.2000283403 transcription factor TF Family: WRKY WRKY transcription factor 36 [Jatropha curcas]
12 Hb_000106_070 0.2015672214 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
13 Hb_006198_150 0.2021731797 - - -
14 Hb_001454_340 0.2028702467 - - ATDI21 [Manihot esculenta]
15 Hb_008616_020 0.2035613188 - - unnamed protein product [Vitis vinifera]
16 Hb_000031_130 0.203648948 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
17 Hb_008225_100 0.2049562503 - - -
18 Hb_000877_090 0.2058327177 - - allergenic-related protein Pt2L4 [Manihot esculenta]
19 Hb_005622_080 0.2061090606 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
20 Hb_002986_110 0.2069030326 - - PREDICTED: patatin-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002760_030 Hb_002760_030 Hb_007729_010 Hb_007729_010 Hb_002760_030--Hb_007729_010 Hb_021901_010 Hb_021901_010 Hb_002760_030--Hb_021901_010 Hb_001545_220 Hb_001545_220 Hb_002760_030--Hb_001545_220 Hb_001269_020 Hb_001269_020 Hb_002760_030--Hb_001269_020 Hb_002677_010 Hb_002677_010 Hb_002760_030--Hb_002677_010 Hb_001073_020 Hb_001073_020 Hb_002760_030--Hb_001073_020 Hb_000856_350 Hb_000856_350 Hb_007729_010--Hb_000856_350 Hb_007729_010--Hb_002677_010 Hb_181092_010 Hb_181092_010 Hb_007729_010--Hb_181092_010 Hb_032582_010 Hb_032582_010 Hb_007729_010--Hb_032582_010 Hb_007729_010--Hb_001269_020 Hb_006198_150 Hb_006198_150 Hb_007729_010--Hb_006198_150 Hb_021901_010--Hb_001073_020 Hb_021901_010--Hb_032582_010 Hb_013654_010 Hb_013654_010 Hb_021901_010--Hb_013654_010 Hb_002986_110 Hb_002986_110 Hb_021901_010--Hb_002986_110 Hb_002005_010 Hb_002005_010 Hb_021901_010--Hb_002005_010 Hb_008214_010 Hb_008214_010 Hb_021901_010--Hb_008214_010 Hb_007627_020 Hb_007627_020 Hb_001545_220--Hb_007627_020 Hb_030602_030 Hb_030602_030 Hb_001545_220--Hb_030602_030 Hb_005673_010 Hb_005673_010 Hb_001545_220--Hb_005673_010 Hb_068533_010 Hb_068533_010 Hb_001545_220--Hb_068533_010 Hb_004458_020 Hb_004458_020 Hb_001545_220--Hb_004458_020 Hb_005211_200 Hb_005211_200 Hb_001545_220--Hb_005211_200 Hb_001269_020--Hb_181092_010 Hb_001269_020--Hb_002677_010 Hb_000185_060 Hb_000185_060 Hb_001269_020--Hb_000185_060 Hb_156949_010 Hb_156949_010 Hb_001269_020--Hb_156949_010 Hb_001269_020--Hb_032582_010 Hb_001269_020--Hb_000856_350 Hb_002677_010--Hb_032582_010 Hb_008616_020 Hb_008616_020 Hb_002677_010--Hb_008616_020 Hb_002677_010--Hb_000185_060 Hb_002677_010--Hb_181092_010 Hb_002677_010--Hb_002986_110 Hb_008053_070 Hb_008053_070 Hb_002677_010--Hb_008053_070 Hb_001168_080 Hb_001168_080 Hb_001073_020--Hb_001168_080 Hb_001073_020--Hb_032582_010 Hb_000905_030 Hb_000905_030 Hb_001073_020--Hb_000905_030 Hb_010839_020 Hb_010839_020 Hb_001073_020--Hb_010839_020 Hb_002138_030 Hb_002138_030 Hb_001073_020--Hb_002138_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.345552 3.33167 0 0.09394 0.0518091 0.122014
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0634851 0 0 3.40957 0

CAGE analysis