Hb_001369_560

Information

Type -
Description -
Location Contig1369: 448637-449233
Sequence    

Annotation

kegg
ID rcu:RCOM_1500010
description 21 kDa protein precursor, putative
nr
ID XP_012090418.1
description PREDICTED: 21 kDa protein-like [Jatropha curcas]
swissprot
ID P17407
description 21 kDa protein OS=Daucus carota PE=2 SV=1
trembl
ID A0A067JES8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26237 PE=4 SV=1
Gene Ontology
ID GO:0004857
description 21 kda

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10201: 450012-452335
cDNA
(Sanger)
(ID:Location)		 017_I12.ab1: 448638-449294 , 038_N14.ab1: 448559-449289 , 045_I04.ab1: 448547-449355

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_560 0.0 - - PREDICTED: 21 kDa protein-like [Jatropha curcas]
2 Hb_022593_030 0.1447601404 - - polyprotein [Citrus endogenous pararetrovirus]
3 Hb_010423_010 0.1616602855 - - -
4 Hb_032050_070 0.2110718675 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
5 Hb_002035_030 0.214471931 - - hypothetical protein PRUPE_ppa003221mg [Prunus persica]
6 Hb_003442_010 0.2164721855 - - PREDICTED: structural maintenance of chromosomes protein 4-like isoform X2 [Citrus sinensis]
7 Hb_000661_280 0.2165421343 - - PREDICTED: protein TRAUCO [Jatropha curcas]
8 Hb_004667_040 0.2167219505 - - ATP binding protein, putative [Ricinus communis]
9 Hb_001195_500 0.2179865986 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
10 Hb_000108_040 0.2197126692 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Gossypium raimondii]
11 Hb_009913_010 0.2235885005 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
12 Hb_002641_050 0.2253358404 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 48 [Jatropha curcas]
13 Hb_001122_010 0.2316913866 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
14 Hb_000347_020 0.2363478826 - - Dormancy/auxin associated family protein, putative [Theobroma cacao]
15 Hb_019040_010 0.2375799639 - - PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
16 Hb_001377_500 0.2377344199 - - DOF AFFECTING GERMINATION 2 family protein [Populus trichocarpa]
17 Hb_011689_100 0.2438620145 - - PREDICTED: uncharacterized protein LOC105631864 [Jatropha curcas]
18 Hb_007885_080 0.2444154367 - - PREDICTED: uncharacterized protein LOC105645857 isoform X1 [Jatropha curcas]
19 Hb_006831_080 0.2455414883 - - PREDICTED: uncharacterized protein LOC105642126 [Jatropha curcas]
20 Hb_000236_120 0.2458983686 - - -

Gene co-expression network

sample Hb_001369_560 Hb_001369_560 Hb_022593_030 Hb_022593_030 Hb_001369_560--Hb_022593_030 Hb_010423_010 Hb_010423_010 Hb_001369_560--Hb_010423_010 Hb_032050_070 Hb_032050_070 Hb_001369_560--Hb_032050_070 Hb_002035_030 Hb_002035_030 Hb_001369_560--Hb_002035_030 Hb_003442_010 Hb_003442_010 Hb_001369_560--Hb_003442_010 Hb_000661_280 Hb_000661_280 Hb_001369_560--Hb_000661_280 Hb_022593_030--Hb_010423_010 Hb_022593_030--Hb_003442_010 Hb_009913_010 Hb_009913_010 Hb_022593_030--Hb_009913_010 Hb_007441_060 Hb_007441_060 Hb_022593_030--Hb_007441_060 Hb_005147_050 Hb_005147_050 Hb_022593_030--Hb_005147_050 Hb_096473_010 Hb_096473_010 Hb_010423_010--Hb_096473_010 Hb_000108_040 Hb_000108_040 Hb_010423_010--Hb_000108_040 Hb_010423_010--Hb_003442_010 Hb_001004_050 Hb_001004_050 Hb_010423_010--Hb_001004_050 Hb_003216_020 Hb_003216_020 Hb_032050_070--Hb_003216_020 Hb_019040_010 Hb_019040_010 Hb_032050_070--Hb_019040_010 Hb_003602_090 Hb_003602_090 Hb_032050_070--Hb_003602_090 Hb_001628_030 Hb_001628_030 Hb_032050_070--Hb_001628_030 Hb_009510_050 Hb_009510_050 Hb_032050_070--Hb_009510_050 Hb_000723_060 Hb_000723_060 Hb_032050_070--Hb_000723_060 Hb_001377_500 Hb_001377_500 Hb_002035_030--Hb_001377_500 Hb_001195_500 Hb_001195_500 Hb_002035_030--Hb_001195_500 Hb_000840_070 Hb_000840_070 Hb_002035_030--Hb_000840_070 Hb_004631_110 Hb_004631_110 Hb_002035_030--Hb_004631_110 Hb_017857_010 Hb_017857_010 Hb_002035_030--Hb_017857_010 Hb_000853_100 Hb_000853_100 Hb_002035_030--Hb_000853_100 Hb_000189_490 Hb_000189_490 Hb_003442_010--Hb_000189_490 Hb_001481_020 Hb_001481_020 Hb_003442_010--Hb_001481_020 Hb_183820_010 Hb_183820_010 Hb_003442_010--Hb_183820_010 Hb_001103_040 Hb_001103_040 Hb_003442_010--Hb_001103_040 Hb_000365_290 Hb_000365_290 Hb_003442_010--Hb_000365_290 Hb_083493_020 Hb_083493_020 Hb_003442_010--Hb_083493_020 Hb_001277_040 Hb_001277_040 Hb_000661_280--Hb_001277_040 Hb_008112_010 Hb_008112_010 Hb_000661_280--Hb_008112_010 Hb_011689_100 Hb_011689_100 Hb_000661_280--Hb_011689_100 Hb_000638_150 Hb_000638_150 Hb_000661_280--Hb_000638_150 Hb_000661_280--Hb_000840_070 Hb_004667_040 Hb_004667_040 Hb_000661_280--Hb_004667_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
290.596 722.574 330.275 404.511 19.8642 3.68734
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.6126 2.71837 0.978109 367.729 7.57545

CAGE analysis