Hb_022593_030

Information

Type -
Description -
Location Contig22593: 24978-27422
Sequence    

Annotation

kegg
ID cam:101511883
description genome polyprotein-like
nr
ID AHC13200.1
description polyprotein [Citrus endogenous pararetrovirus]
swissprot
ID Q91DM0
description Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd) PE=3 SV=1
trembl
ID V9QEM3
description Polyprotein OS=Citrus endogenous pararetrovirus PE=4 SV=1
Gene Ontology
ID GO:0005488
description polyprotein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022593_030 0.0 - - polyprotein [Citrus endogenous pararetrovirus]
2 Hb_001369_560 0.1447601404 - - PREDICTED: 21 kDa protein-like [Jatropha curcas]
3 Hb_010423_010 0.1486041294 - - -
4 Hb_003442_010 0.2027725202 - - PREDICTED: structural maintenance of chromosomes protein 4-like isoform X2 [Citrus sinensis]
5 Hb_009913_010 0.2258413958 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
6 Hb_007441_060 0.232792889 - - -
7 Hb_005147_050 0.2413462222 - - PREDICTED: ankyrin-2-like [Citrus sinensis]
8 Hb_096473_010 0.250407417 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
9 Hb_001122_010 0.2561016972 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
10 Hb_007885_080 0.268167683 - - PREDICTED: uncharacterized protein LOC105645857 isoform X1 [Jatropha curcas]
11 Hb_001481_020 0.2713128605 - - PREDICTED: L-type lectin-domain containing receptor kinase V.9-like [Jatropha curcas]
12 Hb_007773_030 0.2742336648 - - -
13 Hb_000521_310 0.2758822318 - - -
14 Hb_027506_050 0.2767363862 - - -
15 Hb_000108_040 0.2789280412 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Gossypium raimondii]
16 Hb_001004_050 0.2813278873 - - PREDICTED: uncharacterized protein LOC103335231 [Prunus mume]
17 Hb_001103_040 0.2832588117 - - hypothetical protein POPTR_0013s11170g [Populus trichocarpa]
18 Hb_002641_050 0.2867227024 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 48 [Jatropha curcas]
19 Hb_000000_240 0.2875430439 - - PREDICTED: protein LYK5-like [Jatropha curcas]
20 Hb_004667_040 0.2885781255 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_022593_030 Hb_022593_030 Hb_001369_560 Hb_001369_560 Hb_022593_030--Hb_001369_560 Hb_010423_010 Hb_010423_010 Hb_022593_030--Hb_010423_010 Hb_003442_010 Hb_003442_010 Hb_022593_030--Hb_003442_010 Hb_009913_010 Hb_009913_010 Hb_022593_030--Hb_009913_010 Hb_007441_060 Hb_007441_060 Hb_022593_030--Hb_007441_060 Hb_005147_050 Hb_005147_050 Hb_022593_030--Hb_005147_050 Hb_001369_560--Hb_010423_010 Hb_032050_070 Hb_032050_070 Hb_001369_560--Hb_032050_070 Hb_002035_030 Hb_002035_030 Hb_001369_560--Hb_002035_030 Hb_001369_560--Hb_003442_010 Hb_000661_280 Hb_000661_280 Hb_001369_560--Hb_000661_280 Hb_096473_010 Hb_096473_010 Hb_010423_010--Hb_096473_010 Hb_000108_040 Hb_000108_040 Hb_010423_010--Hb_000108_040 Hb_010423_010--Hb_003442_010 Hb_001004_050 Hb_001004_050 Hb_010423_010--Hb_001004_050 Hb_000189_490 Hb_000189_490 Hb_003442_010--Hb_000189_490 Hb_001481_020 Hb_001481_020 Hb_003442_010--Hb_001481_020 Hb_183820_010 Hb_183820_010 Hb_003442_010--Hb_183820_010 Hb_001103_040 Hb_001103_040 Hb_003442_010--Hb_001103_040 Hb_000365_290 Hb_000365_290 Hb_003442_010--Hb_000365_290 Hb_083493_020 Hb_083493_020 Hb_003442_010--Hb_083493_020 Hb_001122_010 Hb_001122_010 Hb_009913_010--Hb_001122_010 Hb_009913_010--Hb_005147_050 Hb_000083_130 Hb_000083_130 Hb_009913_010--Hb_000083_130 Hb_009913_010--Hb_001103_040 Hb_010270_010 Hb_010270_010 Hb_009913_010--Hb_010270_010 Hb_001091_030 Hb_001091_030 Hb_009913_010--Hb_001091_030 Hb_007773_030 Hb_007773_030 Hb_007441_060--Hb_007773_030 Hb_007885_080 Hb_007885_080 Hb_007441_060--Hb_007885_080 Hb_000270_850 Hb_000270_850 Hb_007441_060--Hb_000270_850 Hb_133636_010 Hb_133636_010 Hb_007441_060--Hb_133636_010 Hb_001377_500 Hb_001377_500 Hb_007441_060--Hb_001377_500 Hb_000676_030 Hb_000676_030 Hb_007441_060--Hb_000676_030 Hb_000521_310 Hb_000521_310 Hb_005147_050--Hb_000521_310 Hb_005147_050--Hb_007885_080 Hb_005147_050--Hb_001122_010 Hb_005147_050--Hb_007441_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00856577 0.0155484 0.00634988 0.00650677 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0121635 0

CAGE analysis