Hb_005147_050

Information

Type -
Description -
Location Contig5147: 40261-41275
Sequence    

Annotation

kegg
ID cit:102611029
description ankyrin-2-like
nr
ID XP_006465956.1
description PREDICTED: ankyrin-2-like [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067KX86
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24726 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005147_050 0.0 - - PREDICTED: ankyrin-2-like [Citrus sinensis]
2 Hb_009913_010 0.1888511475 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
3 Hb_000521_310 0.1936740929 - - -
4 Hb_007885_080 0.2256762463 - - PREDICTED: uncharacterized protein LOC105645857 isoform X1 [Jatropha curcas]
5 Hb_001122_010 0.2299378537 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
6 Hb_022593_030 0.2413462222 - - polyprotein [Citrus endogenous pararetrovirus]
7 Hb_007441_060 0.2429833902 - - -
8 Hb_007846_040 0.2679305312 - - PREDICTED: uncharacterized protein LOC105646691 [Jatropha curcas]
9 Hb_001369_560 0.2744509782 - - PREDICTED: 21 kDa protein-like [Jatropha curcas]
10 Hb_001103_040 0.275893118 - - hypothetical protein POPTR_0013s11170g [Populus trichocarpa]
11 Hb_000638_150 0.2785994799 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
12 Hb_027506_050 0.2861558855 - - -
13 Hb_009710_020 0.2866268998 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
14 Hb_010423_010 0.2884349953 - - -
15 Hb_003384_070 0.2889101494 - - PREDICTED: methylesterase 17-like [Populus euphratica]
16 Hb_002232_150 0.2922222587 - - PREDICTED: squalene monooxygenase-like [Jatropha curcas]
17 Hb_010270_010 0.2938120382 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
18 Hb_005839_100 0.2938346844 - - PREDICTED: APO protein 1, chloroplastic isoform X3 [Jatropha curcas]
19 Hb_003442_010 0.2971560691 - - PREDICTED: structural maintenance of chromosomes protein 4-like isoform X2 [Citrus sinensis]
20 Hb_003525_020 0.2983768331 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005147_050 Hb_005147_050 Hb_009913_010 Hb_009913_010 Hb_005147_050--Hb_009913_010 Hb_000521_310 Hb_000521_310 Hb_005147_050--Hb_000521_310 Hb_007885_080 Hb_007885_080 Hb_005147_050--Hb_007885_080 Hb_001122_010 Hb_001122_010 Hb_005147_050--Hb_001122_010 Hb_022593_030 Hb_022593_030 Hb_005147_050--Hb_022593_030 Hb_007441_060 Hb_007441_060 Hb_005147_050--Hb_007441_060 Hb_009913_010--Hb_001122_010 Hb_000083_130 Hb_000083_130 Hb_009913_010--Hb_000083_130 Hb_001103_040 Hb_001103_040 Hb_009913_010--Hb_001103_040 Hb_010270_010 Hb_010270_010 Hb_009913_010--Hb_010270_010 Hb_001091_030 Hb_001091_030 Hb_009913_010--Hb_001091_030 Hb_001140_340 Hb_001140_340 Hb_000521_310--Hb_001140_340 Hb_000521_310--Hb_009913_010 Hb_029475_010 Hb_029475_010 Hb_000521_310--Hb_029475_010 Hb_000521_310--Hb_022593_030 Hb_018616_030 Hb_018616_030 Hb_000521_310--Hb_018616_030 Hb_007885_080--Hb_007441_060 Hb_004724_130 Hb_004724_130 Hb_007885_080--Hb_004724_130 Hb_003525_020 Hb_003525_020 Hb_007885_080--Hb_003525_020 Hb_002035_030 Hb_002035_030 Hb_007885_080--Hb_002035_030 Hb_007885_080--Hb_001122_010 Hb_001122_010--Hb_010270_010 Hb_002781_010 Hb_002781_010 Hb_001122_010--Hb_002781_010 Hb_000638_150 Hb_000638_150 Hb_001122_010--Hb_000638_150 Hb_000256_120 Hb_000256_120 Hb_001122_010--Hb_000256_120 Hb_039342_010 Hb_039342_010 Hb_001122_010--Hb_039342_010 Hb_001369_560 Hb_001369_560 Hb_022593_030--Hb_001369_560 Hb_010423_010 Hb_010423_010 Hb_022593_030--Hb_010423_010 Hb_003442_010 Hb_003442_010 Hb_022593_030--Hb_003442_010 Hb_022593_030--Hb_009913_010 Hb_022593_030--Hb_007441_060 Hb_007773_030 Hb_007773_030 Hb_007441_060--Hb_007773_030 Hb_000270_850 Hb_000270_850 Hb_007441_060--Hb_000270_850 Hb_133636_010 Hb_133636_010 Hb_007441_060--Hb_133636_010 Hb_001377_500 Hb_001377_500 Hb_007441_060--Hb_001377_500 Hb_000676_030 Hb_000676_030 Hb_007441_060--Hb_000676_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.110573 0.171962 0.027188 0.066167 0 0.043747
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.10003 0

CAGE analysis