Hb_007885_080

Information

Type -
Description -
Location Contig7885: 71855-72347
Sequence    

Annotation

kegg
ID cic:CICLE_v10023740mg
description hypothetical protein
nr
ID XP_012086973.1
description PREDICTED: uncharacterized protein LOC105645857 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID V4TQ38
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023740mg PE=4 SV=1
Gene Ontology
ID GO:0005737
description dna topoisomerase 4 subunit b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58200: 72259-72499
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007885_080 0.0 - - PREDICTED: uncharacterized protein LOC105645857 isoform X1 [Jatropha curcas]
2 Hb_007441_060 0.1904291533 - - -
3 Hb_004724_130 0.1987128522 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14 [Jatropha curcas]
4 Hb_003525_020 0.2029471656 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002035_030 0.2248775986 - - hypothetical protein PRUPE_ppa003221mg [Prunus persica]
6 Hb_005147_050 0.2256762463 - - PREDICTED: ankyrin-2-like [Citrus sinensis]
7 Hb_001122_010 0.2298813428 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
8 Hb_001377_500 0.2327538196 - - DOF AFFECTING GERMINATION 2 family protein [Populus trichocarpa]
9 Hb_007773_030 0.2337133676 - - -
10 Hb_000175_500 0.2339911801 - - PREDICTED: uncharacterized protein At1g15400 [Populus euphratica]
11 Hb_012760_180 0.239794653 - - Basic-leucine zipper transcription factor family protein, putative [Theobroma cacao]
12 Hb_042553_010 0.2401067156 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
13 Hb_007951_120 0.2402929772 - - PREDICTED: uncharacterized protein At1g15400 [Populus euphratica]
14 Hb_056012_010 0.2413134784 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
15 Hb_012018_010 0.2436134616 - - hypothetical protein MIMGU_mgv1a0024251mg, partial [Erythranthe guttata]
16 Hb_005157_010 0.2443364625 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
17 Hb_001369_560 0.2444154367 - - PREDICTED: 21 kDa protein-like [Jatropha curcas]
18 Hb_001231_080 0.2455919884 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like isoform X1 [Fragaria vesca subsp. vesca]
19 Hb_048848_010 0.2457197439 - - hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
20 Hb_114674_010 0.2483510539 - - hypothetical protein JCGZ_26658 [Jatropha curcas]

Gene co-expression network

sample Hb_007885_080 Hb_007885_080 Hb_007441_060 Hb_007441_060 Hb_007885_080--Hb_007441_060 Hb_004724_130 Hb_004724_130 Hb_007885_080--Hb_004724_130 Hb_003525_020 Hb_003525_020 Hb_007885_080--Hb_003525_020 Hb_002035_030 Hb_002035_030 Hb_007885_080--Hb_002035_030 Hb_005147_050 Hb_005147_050 Hb_007885_080--Hb_005147_050 Hb_001122_010 Hb_001122_010 Hb_007885_080--Hb_001122_010 Hb_007773_030 Hb_007773_030 Hb_007441_060--Hb_007773_030 Hb_000270_850 Hb_000270_850 Hb_007441_060--Hb_000270_850 Hb_133636_010 Hb_133636_010 Hb_007441_060--Hb_133636_010 Hb_001377_500 Hb_001377_500 Hb_007441_060--Hb_001377_500 Hb_000676_030 Hb_000676_030 Hb_007441_060--Hb_000676_030 Hb_000175_500 Hb_000175_500 Hb_004724_130--Hb_000175_500 Hb_001863_150 Hb_001863_150 Hb_004724_130--Hb_001863_150 Hb_001231_080 Hb_001231_080 Hb_004724_130--Hb_001231_080 Hb_002235_240 Hb_002235_240 Hb_004724_130--Hb_002235_240 Hb_000538_190 Hb_000538_190 Hb_004724_130--Hb_000538_190 Hb_001141_360 Hb_001141_360 Hb_004724_130--Hb_001141_360 Hb_003525_020--Hb_000538_190 Hb_048848_010 Hb_048848_010 Hb_003525_020--Hb_048848_010 Hb_001369_770 Hb_001369_770 Hb_003525_020--Hb_001369_770 Hb_001584_010 Hb_001584_010 Hb_003525_020--Hb_001584_010 Hb_010261_010 Hb_010261_010 Hb_003525_020--Hb_010261_010 Hb_000362_090 Hb_000362_090 Hb_003525_020--Hb_000362_090 Hb_002035_030--Hb_001377_500 Hb_001195_500 Hb_001195_500 Hb_002035_030--Hb_001195_500 Hb_000840_070 Hb_000840_070 Hb_002035_030--Hb_000840_070 Hb_004631_110 Hb_004631_110 Hb_002035_030--Hb_004631_110 Hb_017857_010 Hb_017857_010 Hb_002035_030--Hb_017857_010 Hb_000853_100 Hb_000853_100 Hb_002035_030--Hb_000853_100 Hb_009913_010 Hb_009913_010 Hb_005147_050--Hb_009913_010 Hb_000521_310 Hb_000521_310 Hb_005147_050--Hb_000521_310 Hb_005147_050--Hb_001122_010 Hb_022593_030 Hb_022593_030 Hb_005147_050--Hb_022593_030 Hb_005147_050--Hb_007441_060 Hb_010270_010 Hb_010270_010 Hb_001122_010--Hb_010270_010 Hb_002781_010 Hb_002781_010 Hb_001122_010--Hb_002781_010 Hb_000638_150 Hb_000638_150 Hb_001122_010--Hb_000638_150 Hb_001122_010--Hb_009913_010 Hb_000256_120 Hb_000256_120 Hb_001122_010--Hb_000256_120 Hb_039342_010 Hb_039342_010 Hb_001122_010--Hb_039342_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.41184 8.24376 1.96377 1.5291 0.471885 0.929456
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.343014 2.69299 0

CAGE analysis