Hb_001863_150

Information

Type -
Description -
Location Contig1863: 100289-103523
Sequence    

Annotation

kegg
ID pop:POPTR_0005s17320g
description POPTRDRAFT_651250; VQ motif-containing family protein
nr
ID XP_002306566.1
description VQ motif-containing family protein [Populus trichocarpa]
swissprot
ID Q9M9F0
description VQ motif-containing protein 9 OS=Arabidopsis thaliana GN=VQ9 PE=1 SV=1
trembl
ID B9H707
description VQ motif-containing family protein OS=Populus trichocarpa GN=POPTR_0005s17320g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18339: 101382-101810 , PASA_asmbl_18340: 102268-103781
cDNA
(Sanger)
(ID:Location)		 019_G21.ab1: 102800-103459

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001863_150 0.0 - - VQ motif-containing family protein [Populus trichocarpa]
2 Hb_002235_240 0.1390113241 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
3 Hb_001141_360 0.141474195 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
4 Hb_005400_040 0.1439963844 - - PREDICTED: uncharacterized protein At4g04775-like [Jatropha curcas]
5 Hb_004724_130 0.1481263915 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14 [Jatropha curcas]
6 Hb_042175_010 0.1482668701 - - hypothetical protein CISIN_1g0016721mg, partial [Citrus sinensis]
7 Hb_009838_060 0.1545119426 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000062_080 0.1573328782 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
9 Hb_000976_290 0.1604637535 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105646228 [Jatropha curcas]
10 Hb_005147_040 0.1620172509 - - PREDICTED: uncharacterized protein LOC105629674 [Jatropha curcas]
11 Hb_007007_070 0.1664609967 transcription factor TF Family: TCP hypothetical protein MIMGU_mgv1a022855mg, partial [Erythranthe guttata]
12 Hb_129204_060 0.1669093701 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
13 Hb_001865_060 0.1684320328 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
14 Hb_003494_060 0.169291311 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
15 Hb_000010_350 0.1737966018 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
16 Hb_003120_050 0.1744710096 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
17 Hb_002686_280 0.1892222515 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
18 Hb_002477_120 0.1896309309 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
19 Hb_000802_190 0.1902472156 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
20 Hb_010079_030 0.1905629848 - - -

Gene co-expression network

sample Hb_001863_150 Hb_001863_150 Hb_002235_240 Hb_002235_240 Hb_001863_150--Hb_002235_240 Hb_001141_360 Hb_001141_360 Hb_001863_150--Hb_001141_360 Hb_005400_040 Hb_005400_040 Hb_001863_150--Hb_005400_040 Hb_004724_130 Hb_004724_130 Hb_001863_150--Hb_004724_130 Hb_042175_010 Hb_042175_010 Hb_001863_150--Hb_042175_010 Hb_009838_060 Hb_009838_060 Hb_001863_150--Hb_009838_060 Hb_129204_060 Hb_129204_060 Hb_002235_240--Hb_129204_060 Hb_000836_120 Hb_000836_120 Hb_002235_240--Hb_000836_120 Hb_003849_260 Hb_003849_260 Hb_002235_240--Hb_003849_260 Hb_000215_410 Hb_000215_410 Hb_002235_240--Hb_000215_410 Hb_002235_240--Hb_001141_360 Hb_001865_060 Hb_001865_060 Hb_001141_360--Hb_001865_060 Hb_003494_060 Hb_003494_060 Hb_001141_360--Hb_003494_060 Hb_000062_080 Hb_000062_080 Hb_001141_360--Hb_000062_080 Hb_003120_050 Hb_003120_050 Hb_001141_360--Hb_003120_050 Hb_012725_040 Hb_012725_040 Hb_001141_360--Hb_012725_040 Hb_012226_010 Hb_012226_010 Hb_001141_360--Hb_012226_010 Hb_000997_110 Hb_000997_110 Hb_005400_040--Hb_000997_110 Hb_005288_020 Hb_005288_020 Hb_005400_040--Hb_005288_020 Hb_005539_020 Hb_005539_020 Hb_005400_040--Hb_005539_020 Hb_005147_040 Hb_005147_040 Hb_005400_040--Hb_005147_040 Hb_000976_290 Hb_000976_290 Hb_005400_040--Hb_000976_290 Hb_000175_500 Hb_000175_500 Hb_004724_130--Hb_000175_500 Hb_001231_080 Hb_001231_080 Hb_004724_130--Hb_001231_080 Hb_004724_130--Hb_002235_240 Hb_000538_190 Hb_000538_190 Hb_004724_130--Hb_000538_190 Hb_004724_130--Hb_001141_360 Hb_003060_090 Hb_003060_090 Hb_042175_010--Hb_003060_090 Hb_042175_010--Hb_001141_360 Hb_002686_280 Hb_002686_280 Hb_042175_010--Hb_002686_280 Hb_042175_010--Hb_001865_060 Hb_000010_350 Hb_000010_350 Hb_042175_010--Hb_000010_350 Hb_009838_060--Hb_003494_060 Hb_009838_060--Hb_001141_360 Hb_012760_010 Hb_012760_010 Hb_009838_060--Hb_012760_010 Hb_005656_140 Hb_005656_140 Hb_009838_060--Hb_005656_140 Hb_001546_110 Hb_001546_110 Hb_009838_060--Hb_001546_110 Hb_185513_010 Hb_185513_010 Hb_009838_060--Hb_185513_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.3056 105.39 14.7533 5.46366 7.04771 8.70579
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.32926 12.4838 9.71461 25.914 6.4893

CAGE analysis