Hb_012760_010

Information

Type -
Description -
Location Contig12760: 1962-2342
Sequence    

Annotation

kegg
ID csv:101222015
description uncharacterized LOC101222015
nr
ID XP_012088455.1
description PREDICTED: uncharacterized protein At4g08330, chloroplastic [Jatropha curcas]
swissprot
ID Q9STN5
description Uncharacterized protein At4g08330, chloroplastic OS=Arabidopsis thaliana GN=At4g08330 PE=1 SV=1
trembl
ID A0A067JVC6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25338 PE=4 SV=1
Gene Ontology
ID GO:0033743
description methionine-s-oxide reductase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08412: 1868-2577
cDNA
(Sanger)
(ID:Location)		 020_L17.ab1: 1948-2547 , 026_N02.ab1: 1868-2566

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012760_010 0.0 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic [Jatropha curcas]
2 Hb_000483_040 0.1249486515 - - Cell division protein ftsH, putative [Ricinus communis]
3 Hb_009838_060 0.1357921269 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001546_110 0.1406115274 - - PREDICTED: leucine-rich repeat extensin-like protein 3 [Jatropha curcas]
5 Hb_003078_050 0.1446932959 - - PREDICTED: serine/threonine-protein kinase OXI1 [Jatropha curcas]
6 Hb_000069_230 0.1494013505 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH13-like [Jatropha curcas]
7 Hb_003494_060 0.151604151 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
8 Hb_020400_040 0.1668574136 - - PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Jatropha curcas]
9 Hb_000634_070 0.1686956366 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
10 Hb_005656_140 0.1770268267 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 9 [Jatropha curcas]
11 Hb_028207_040 0.1793458118 - - PREDICTED: beta-hexosaminidase 2 [Jatropha curcas]
12 Hb_001950_030 0.180526042 - - PREDICTED: F-box protein SKIP2 [Jatropha curcas]
13 Hb_003120_050 0.1827613328 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
14 Hb_001141_360 0.1833781717 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
15 Hb_000465_080 0.1879774244 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
16 Hb_002205_010 0.1885325797 - - hypothetical protein JCGZ_03337 [Jatropha curcas]
17 Hb_000179_240 0.1896016269 - - PREDICTED: threonine synthase 1, chloroplastic [Jatropha curcas]
18 Hb_001225_090 0.1941304975 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
19 Hb_012226_010 0.1954092113 - - PREDICTED: protein DGCR14 [Jatropha curcas]
20 Hb_022693_050 0.1969233231 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]

Gene co-expression network

sample Hb_012760_010 Hb_012760_010 Hb_000483_040 Hb_000483_040 Hb_012760_010--Hb_000483_040 Hb_009838_060 Hb_009838_060 Hb_012760_010--Hb_009838_060 Hb_001546_110 Hb_001546_110 Hb_012760_010--Hb_001546_110 Hb_003078_050 Hb_003078_050 Hb_012760_010--Hb_003078_050 Hb_000069_230 Hb_000069_230 Hb_012760_010--Hb_000069_230 Hb_003494_060 Hb_003494_060 Hb_012760_010--Hb_003494_060 Hb_000483_040--Hb_003494_060 Hb_028207_040 Hb_028207_040 Hb_000483_040--Hb_028207_040 Hb_000483_040--Hb_000069_230 Hb_001369_570 Hb_001369_570 Hb_000483_040--Hb_001369_570 Hb_000483_040--Hb_003078_050 Hb_009838_060--Hb_003494_060 Hb_001141_360 Hb_001141_360 Hb_009838_060--Hb_001141_360 Hb_005656_140 Hb_005656_140 Hb_009838_060--Hb_005656_140 Hb_009838_060--Hb_001546_110 Hb_185513_010 Hb_185513_010 Hb_009838_060--Hb_185513_010 Hb_003120_050 Hb_003120_050 Hb_001546_110--Hb_003120_050 Hb_001546_110--Hb_003494_060 Hb_003038_010 Hb_003038_010 Hb_001546_110--Hb_003038_010 Hb_001546_110--Hb_001141_360 Hb_000634_070 Hb_000634_070 Hb_003078_050--Hb_000634_070 Hb_003078_050--Hb_000069_230 Hb_003078_050--Hb_028207_040 Hb_003097_100 Hb_003097_100 Hb_003078_050--Hb_003097_100 Hb_000258_380 Hb_000258_380 Hb_003078_050--Hb_000258_380 Hb_001205_030 Hb_001205_030 Hb_003078_050--Hb_001205_030 Hb_000069_230--Hb_003097_100 Hb_000069_230--Hb_028207_040 Hb_000069_230--Hb_000634_070 Hb_004597_010 Hb_004597_010 Hb_000069_230--Hb_004597_010 Hb_001525_010 Hb_001525_010 Hb_000069_230--Hb_001525_010 Hb_003494_060--Hb_001141_360 Hb_001865_060 Hb_001865_060 Hb_003494_060--Hb_001865_060 Hb_012725_040 Hb_012725_040 Hb_003494_060--Hb_012725_040 Hb_000062_080 Hb_000062_080 Hb_003494_060--Hb_000062_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
297.092 1871.09 188.949 318.88 319.476 218.724
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
145.336 414.144 284.01 93.6442 27.3675

CAGE analysis