Hb_000483_040

Information

Type -
Description -
Location Contig483: 42319-47032
Sequence    

Annotation

kegg
ID rcu:RCOM_0340700
description Cell division protein ftsH, putative (EC:3.6.4.3)
nr
ID XP_002531859.1
description Cell division protein ftsH, putative [Ricinus communis]
swissprot
ID Q1PDW5
description ATP-dependent zinc metalloprotease FTSH 6, chloroplastic OS=Arabidopsis thaliana GN=FTSH6 PE=2 SV=1
trembl
ID B9T0U0
description Cell division protein ftsH, putative OS=Ricinus communis GN=RCOM_0340700 PE=3 SV=1
Gene Ontology
ID GO:0016021
description atp-dependent zinc metalloprotease ftsh chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44798: 43799-43972 , PASA_asmbl_44799: 46199-46702
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000483_040 0.0 - - Cell division protein ftsH, putative [Ricinus communis]
2 Hb_003494_060 0.1150253495 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
3 Hb_028207_040 0.1235621276 - - PREDICTED: beta-hexosaminidase 2 [Jatropha curcas]
4 Hb_012760_010 0.1249486515 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic [Jatropha curcas]
5 Hb_000069_230 0.1405704586 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH13-like [Jatropha curcas]
6 Hb_001369_570 0.1422527663 - - hypothetical protein JCGZ_26236 [Jatropha curcas]
7 Hb_003078_050 0.1426827466 - - PREDICTED: serine/threonine-protein kinase OXI1 [Jatropha curcas]
8 Hb_003120_050 0.1565463292 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
9 Hb_000179_240 0.1617553019 - - PREDICTED: threonine synthase 1, chloroplastic [Jatropha curcas]
10 Hb_001141_360 0.1622421082 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
11 Hb_000953_050 0.1639123967 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
12 Hb_005656_140 0.1648390513 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 9 [Jatropha curcas]
13 Hb_000634_070 0.1666493393 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
14 Hb_005496_180 0.1678436075 - - PREDICTED: U-box domain-containing protein 4-like [Jatropha curcas]
15 Hb_009838_060 0.16798988 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002026_060 0.1715143831 - - PREDICTED: uncharacterized protein LOC105645786 [Jatropha curcas]
17 Hb_000809_090 0.1735655473 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA isoform X1 [Jatropha curcas]
18 Hb_010921_030 0.1745450983 transcription factor TF Family: PHD PREDICTED: PHD finger protein At2g01810 [Jatropha curcas]
19 Hb_003097_100 0.1752294047 - - probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic [Jatropha curcas]
20 Hb_001546_110 0.1759846306 - - PREDICTED: leucine-rich repeat extensin-like protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000483_040 Hb_000483_040 Hb_003494_060 Hb_003494_060 Hb_000483_040--Hb_003494_060 Hb_028207_040 Hb_028207_040 Hb_000483_040--Hb_028207_040 Hb_012760_010 Hb_012760_010 Hb_000483_040--Hb_012760_010 Hb_000069_230 Hb_000069_230 Hb_000483_040--Hb_000069_230 Hb_001369_570 Hb_001369_570 Hb_000483_040--Hb_001369_570 Hb_003078_050 Hb_003078_050 Hb_000483_040--Hb_003078_050 Hb_001141_360 Hb_001141_360 Hb_003494_060--Hb_001141_360 Hb_001865_060 Hb_001865_060 Hb_003494_060--Hb_001865_060 Hb_012725_040 Hb_012725_040 Hb_003494_060--Hb_012725_040 Hb_009838_060 Hb_009838_060 Hb_003494_060--Hb_009838_060 Hb_000062_080 Hb_000062_080 Hb_003494_060--Hb_000062_080 Hb_000953_050 Hb_000953_050 Hb_028207_040--Hb_000953_050 Hb_001525_010 Hb_001525_010 Hb_028207_040--Hb_001525_010 Hb_028207_040--Hb_003078_050 Hb_003120_050 Hb_003120_050 Hb_028207_040--Hb_003120_050 Hb_028207_040--Hb_001369_570 Hb_028207_040--Hb_000069_230 Hb_012760_010--Hb_009838_060 Hb_001546_110 Hb_001546_110 Hb_012760_010--Hb_001546_110 Hb_012760_010--Hb_003078_050 Hb_012760_010--Hb_000069_230 Hb_012760_010--Hb_003494_060 Hb_003097_100 Hb_003097_100 Hb_000069_230--Hb_003097_100 Hb_000069_230--Hb_003078_050 Hb_000634_070 Hb_000634_070 Hb_000069_230--Hb_000634_070 Hb_004597_010 Hb_004597_010 Hb_000069_230--Hb_004597_010 Hb_000069_230--Hb_001525_010 Hb_002572_050 Hb_002572_050 Hb_001369_570--Hb_002572_050 Hb_001369_570--Hb_000953_050 Hb_005496_180 Hb_005496_180 Hb_001369_570--Hb_005496_180 Hb_001794_060 Hb_001794_060 Hb_001369_570--Hb_001794_060 Hb_001369_570--Hb_001525_010 Hb_003078_050--Hb_000634_070 Hb_003078_050--Hb_003097_100 Hb_000258_380 Hb_000258_380 Hb_003078_050--Hb_000258_380 Hb_001205_030 Hb_001205_030 Hb_003078_050--Hb_001205_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.35615 18.6352 2.36698 3.26233 4.02695 2.51705
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.60144 3.1821 3.82182 1.34898 1.3014

CAGE analysis