Hb_001546_110

Information

Type -
Description -
Location Contig1546: 97999-98655
Sequence    

Annotation

kegg
ID rcu:RCOM_0652600
description actin binding protein, putative
nr
ID XP_012068883.1
description PREDICTED: leucine-rich repeat extensin-like protein 3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9S5R2
description Actin binding protein, putative OS=Ricinus communis GN=RCOM_0652600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001546_110 0.0 - - PREDICTED: leucine-rich repeat extensin-like protein 3 [Jatropha curcas]
2 Hb_003120_050 0.1356752455 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
3 Hb_012760_010 0.1406115274 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic [Jatropha curcas]
4 Hb_009838_060 0.1480563201 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003494_060 0.1492355629 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
6 Hb_003038_010 0.1506376746 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_001141_360 0.1626270483 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
8 Hb_000465_080 0.1702506302 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
9 Hb_028207_040 0.1706142854 - - PREDICTED: beta-hexosaminidase 2 [Jatropha curcas]
10 Hb_000069_230 0.173840461 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH13-like [Jatropha curcas]
11 Hb_000483_040 0.1759846306 - - Cell division protein ftsH, putative [Ricinus communis]
12 Hb_012725_040 0.1767381313 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
13 Hb_001258_150 0.1778561458 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
14 Hb_003078_050 0.1831459174 - - PREDICTED: serine/threonine-protein kinase OXI1 [Jatropha curcas]
15 Hb_001865_060 0.1902179031 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
16 Hb_185513_010 0.1908484898 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001489_120 0.1926812266 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
18 Hb_000220_090 0.1929401755 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Jatropha curcas]
19 Hb_020400_040 0.1970722505 - - PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Jatropha curcas]
20 Hb_005000_300 0.1974296814 transcription factor TF Family: TRAF putative regulatory protein NPR1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_001546_110 Hb_001546_110 Hb_003120_050 Hb_003120_050 Hb_001546_110--Hb_003120_050 Hb_012760_010 Hb_012760_010 Hb_001546_110--Hb_012760_010 Hb_009838_060 Hb_009838_060 Hb_001546_110--Hb_009838_060 Hb_003494_060 Hb_003494_060 Hb_001546_110--Hb_003494_060 Hb_003038_010 Hb_003038_010 Hb_001546_110--Hb_003038_010 Hb_001141_360 Hb_001141_360 Hb_001546_110--Hb_001141_360 Hb_000465_080 Hb_000465_080 Hb_003120_050--Hb_000465_080 Hb_003120_050--Hb_001141_360 Hb_028207_040 Hb_028207_040 Hb_003120_050--Hb_028207_040 Hb_003120_050--Hb_003494_060 Hb_001865_060 Hb_001865_060 Hb_003120_050--Hb_001865_060 Hb_000084_240 Hb_000084_240 Hb_003120_050--Hb_000084_240 Hb_000483_040 Hb_000483_040 Hb_012760_010--Hb_000483_040 Hb_012760_010--Hb_009838_060 Hb_003078_050 Hb_003078_050 Hb_012760_010--Hb_003078_050 Hb_000069_230 Hb_000069_230 Hb_012760_010--Hb_000069_230 Hb_012760_010--Hb_003494_060 Hb_009838_060--Hb_003494_060 Hb_009838_060--Hb_001141_360 Hb_005656_140 Hb_005656_140 Hb_009838_060--Hb_005656_140 Hb_185513_010 Hb_185513_010 Hb_009838_060--Hb_185513_010 Hb_003494_060--Hb_001141_360 Hb_003494_060--Hb_001865_060 Hb_012725_040 Hb_012725_040 Hb_003494_060--Hb_012725_040 Hb_003494_060--Hb_000483_040 Hb_000062_080 Hb_000062_080 Hb_003494_060--Hb_000062_080 Hb_000220_090 Hb_000220_090 Hb_003038_010--Hb_000220_090 Hb_000015_180 Hb_000015_180 Hb_003038_010--Hb_000015_180 Hb_001258_150 Hb_001258_150 Hb_003038_010--Hb_001258_150 Hb_003038_010--Hb_009838_060 Hb_003038_010--Hb_003494_060 Hb_001141_360--Hb_001865_060 Hb_001141_360--Hb_000062_080 Hb_001141_360--Hb_012725_040 Hb_012226_010 Hb_012226_010 Hb_001141_360--Hb_012226_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.4799 215.803 30.9558 24.0602 25.057 15.1159
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.9431 24.6868 19.4567 5.22152 11.3215

CAGE analysis