Hb_003038_010

Information

Type -
Description -
Location Contig3038: 6462-12662
Sequence    

Annotation

kegg
ID rcu:RCOM_0535970
description ubiquitin-protein ligase, putative
nr
ID XP_002521570.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID O23225
description U-box domain-containing protein 5 OS=Arabidopsis thaliana GN=PUB5 PE=3 SV=3
trembl
ID B9S6F1
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_0535970 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32024: 6268-8743 , PASA_asmbl_32026: 8871-12901
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003038_010 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_000220_090 0.1037068136 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Jatropha curcas]
3 Hb_000015_180 0.1291123108 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
4 Hb_001258_150 0.1368519457 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
5 Hb_001546_110 0.1506376746 - - PREDICTED: leucine-rich repeat extensin-like protein 3 [Jatropha curcas]
6 Hb_009838_060 0.1510028273 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003494_060 0.1520500048 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
8 Hb_000803_060 0.1551273248 - - poly(p)/ATP NAD kinase, putative [Ricinus communis]
9 Hb_006414_020 0.155955368 transcription factor TF Family: MYB -
10 Hb_001489_120 0.1570583892 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
11 Hb_056012_010 0.1651521979 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
12 Hb_102100_010 0.1653680009 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
13 Hb_012725_040 0.1667210525 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
14 Hb_185513_010 0.1672537138 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002760_040 0.1701668353 - - PREDICTED: uncharacterized protein LOC105641234 [Jatropha curcas]
16 Hb_004787_100 0.1728164382 - - PREDICTED: transcription factor bHLH47 [Jatropha curcas]
17 Hb_000103_400 0.176541386 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
18 Hb_003224_030 0.1780528679 - - hypothetical protein POPTR_0077s002402g, partial [Populus trichocarpa]
19 Hb_002217_270 0.1806703221 - - PREDICTED: desiccation-related protein PCC13-62-like [Jatropha curcas]
20 Hb_000960_010 0.1819741402 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]

Gene co-expression network

sample Hb_003038_010 Hb_003038_010 Hb_000220_090 Hb_000220_090 Hb_003038_010--Hb_000220_090 Hb_000015_180 Hb_000015_180 Hb_003038_010--Hb_000015_180 Hb_001258_150 Hb_001258_150 Hb_003038_010--Hb_001258_150 Hb_001546_110 Hb_001546_110 Hb_003038_010--Hb_001546_110 Hb_009838_060 Hb_009838_060 Hb_003038_010--Hb_009838_060 Hb_003494_060 Hb_003494_060 Hb_003038_010--Hb_003494_060 Hb_000220_090--Hb_000015_180 Hb_056012_010 Hb_056012_010 Hb_000220_090--Hb_056012_010 Hb_000803_060 Hb_000803_060 Hb_000220_090--Hb_000803_060 Hb_102100_010 Hb_102100_010 Hb_000220_090--Hb_102100_010 Hb_000434_050 Hb_000434_050 Hb_000220_090--Hb_000434_050 Hb_002835_260 Hb_002835_260 Hb_000015_180--Hb_002835_260 Hb_000015_180--Hb_000434_050 Hb_000015_180--Hb_102100_010 Hb_011120_020 Hb_011120_020 Hb_000015_180--Hb_011120_020 Hb_001489_120 Hb_001489_120 Hb_001258_150--Hb_001489_120 Hb_001258_150--Hb_000803_060 Hb_004032_310 Hb_004032_310 Hb_001258_150--Hb_004032_310 Hb_012725_040 Hb_012725_040 Hb_001258_150--Hb_012725_040 Hb_000071_140 Hb_000071_140 Hb_001258_150--Hb_000071_140 Hb_011360_090 Hb_011360_090 Hb_001258_150--Hb_011360_090 Hb_003120_050 Hb_003120_050 Hb_001546_110--Hb_003120_050 Hb_012760_010 Hb_012760_010 Hb_001546_110--Hb_012760_010 Hb_001546_110--Hb_009838_060 Hb_001546_110--Hb_003494_060 Hb_001141_360 Hb_001141_360 Hb_001546_110--Hb_001141_360 Hb_009838_060--Hb_003494_060 Hb_009838_060--Hb_001141_360 Hb_009838_060--Hb_012760_010 Hb_005656_140 Hb_005656_140 Hb_009838_060--Hb_005656_140 Hb_185513_010 Hb_185513_010 Hb_009838_060--Hb_185513_010 Hb_003494_060--Hb_001141_360 Hb_001865_060 Hb_001865_060 Hb_003494_060--Hb_001865_060 Hb_003494_060--Hb_012725_040 Hb_000483_040 Hb_000483_040 Hb_003494_060--Hb_000483_040 Hb_000062_080 Hb_000062_080 Hb_003494_060--Hb_000062_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.87604 74.226 10.5629 10.334 4.55288 4.96688
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.00353 3.12703 7.56933 3.23816 2.8224

CAGE analysis