Hb_000220_090

Information

Type -
Description -
Location Contig220: 166624-167133
Sequence    

Annotation

kegg
ID pop:POPTR_0008s12460g
description POPTRDRAFT_803581; RING-H2 zinc finger protein RHA2a
nr
ID XP_012075706.1
description PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Jatropha curcas]
swissprot
ID Q9ZT50
description E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A PE=1 SV=1
trembl
ID A0A067KFU7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09295 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase rha2a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22648: 166329-167200
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000220_090 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Jatropha curcas]
2 Hb_000015_180 0.0889394987 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
3 Hb_003038_010 0.1037068136 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_056012_010 0.1150645739 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
5 Hb_000803_060 0.118452898 - - poly(p)/ATP NAD kinase, putative [Ricinus communis]
6 Hb_102100_010 0.1301596904 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
7 Hb_000434_050 0.1321631674 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
8 Hb_000103_400 0.1338563425 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
9 Hb_003913_030 0.1390041465 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
10 Hb_185513_010 0.144219481 - - conserved hypothetical protein [Ricinus communis]
11 Hb_012787_040 0.1459940583 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
12 Hb_002835_260 0.1473496778 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
13 Hb_000532_030 0.1485684477 - - PREDICTED: oxalate--CoA ligase-like [Jatropha curcas]
14 Hb_006414_020 0.1489302966 transcription factor TF Family: MYB -
15 Hb_001956_190 0.1504622497 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
16 Hb_001258_150 0.1535344381 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
17 Hb_006538_030 0.1536374477 - - PREDICTED: uncharacterized protein LOC105642039 [Jatropha curcas]
18 Hb_004787_100 0.1550791936 - - PREDICTED: transcription factor bHLH47 [Jatropha curcas]
19 Hb_002918_150 0.1561600581 transcription factor TF Family: ERF ethylene-responsive element binding protein 1 [Hevea brasiliensis]
20 Hb_011360_090 0.1606061993 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]

Gene co-expression network

sample Hb_000220_090 Hb_000220_090 Hb_000015_180 Hb_000015_180 Hb_000220_090--Hb_000015_180 Hb_003038_010 Hb_003038_010 Hb_000220_090--Hb_003038_010 Hb_056012_010 Hb_056012_010 Hb_000220_090--Hb_056012_010 Hb_000803_060 Hb_000803_060 Hb_000220_090--Hb_000803_060 Hb_102100_010 Hb_102100_010 Hb_000220_090--Hb_102100_010 Hb_000434_050 Hb_000434_050 Hb_000220_090--Hb_000434_050 Hb_002835_260 Hb_002835_260 Hb_000015_180--Hb_002835_260 Hb_000015_180--Hb_000434_050 Hb_000015_180--Hb_102100_010 Hb_000015_180--Hb_003038_010 Hb_011120_020 Hb_011120_020 Hb_000015_180--Hb_011120_020 Hb_001258_150 Hb_001258_150 Hb_003038_010--Hb_001258_150 Hb_001546_110 Hb_001546_110 Hb_003038_010--Hb_001546_110 Hb_009838_060 Hb_009838_060 Hb_003038_010--Hb_009838_060 Hb_003494_060 Hb_003494_060 Hb_003038_010--Hb_003494_060 Hb_056012_010--Hb_000803_060 Hb_056012_010--Hb_102100_010 Hb_056012_010--Hb_001258_150 Hb_185513_010 Hb_185513_010 Hb_056012_010--Hb_185513_010 Hb_001662_170 Hb_001662_170 Hb_056012_010--Hb_001662_170 Hb_012787_040 Hb_012787_040 Hb_000803_060--Hb_012787_040 Hb_006414_020 Hb_006414_020 Hb_000803_060--Hb_006414_020 Hb_000803_060--Hb_001258_150 Hb_001489_120 Hb_001489_120 Hb_000803_060--Hb_001489_120 Hb_003752_120 Hb_003752_120 Hb_000803_060--Hb_003752_120 Hb_004032_310 Hb_004032_310 Hb_000803_060--Hb_004032_310 Hb_007951_120 Hb_007951_120 Hb_102100_010--Hb_007951_120 Hb_016404_010 Hb_016404_010 Hb_102100_010--Hb_016404_010 Hb_138575_010 Hb_138575_010 Hb_102100_010--Hb_138575_010 Hb_185080_010 Hb_185080_010 Hb_000434_050--Hb_185080_010 Hb_078901_010 Hb_078901_010 Hb_000434_050--Hb_078901_010 Hb_000805_150 Hb_000805_150 Hb_000434_050--Hb_000805_150 Hb_010589_130 Hb_010589_130 Hb_000434_050--Hb_010589_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.439 519.562 81.1563 116.301 18.8274 26.3224
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.8814 22.6638 28.9983 34.5687 16.1012

CAGE analysis