Hb_007951_120

Information

Type -
Description -
Location Contig7951: 97246-97614
Sequence    

Annotation

kegg
ID pop:POPTR_0003s06070g
description POPTRDRAFT_817071; hypothetical protein
nr
ID XP_011040039.1
description PREDICTED: uncharacterized protein At1g15400 [Populus euphratica]
swissprot
ID Q9XI29
description Uncharacterized protein At1g15400 OS=Arabidopsis thaliana GN=At1g15400 PE=1 SV=2
trembl
ID A0A067KLT5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06168 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007951_120 0.0 - - PREDICTED: uncharacterized protein At1g15400 [Populus euphratica]
2 Hb_102100_010 0.1267708252 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
3 Hb_181824_010 0.1337219219 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
4 Hb_033149_020 0.1527277453 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
5 Hb_056012_010 0.1572070696 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
6 Hb_006414_020 0.1632581154 transcription factor TF Family: MYB -
7 Hb_003216_050 0.1633029729 - - PREDICTED: OBERON-like protein [Jatropha curcas]
8 Hb_008246_090 0.1636978331 - - -
9 Hb_003226_080 0.1665600889 - - PREDICTED: RING-H2 finger protein ATL5-like [Jatropha curcas]
10 Hb_008380_010 0.1667009619 - - PREDICTED: PRA1 family protein B4-like [Camelina sativa]
11 Hb_016404_010 0.1776380938 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
12 Hb_010589_130 0.1781070598 - - PREDICTED: uncharacterized protein LOC104884346 [Beta vulgaris subsp. vulgaris]
13 Hb_009040_010 0.1781364314 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
14 Hb_011360_090 0.1804294719 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
15 Hb_001258_150 0.185617997 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
16 Hb_015481_010 0.1878098262 transcription factor TF Family: PLATZ unknown [Medicago truncatula]
17 Hb_042553_010 0.1884648542 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
18 Hb_000284_180 0.1888916704 - - hypothetical protein EUGRSUZ_B01865 [Eucalyptus grandis]
19 Hb_000803_060 0.1897478561 - - poly(p)/ATP NAD kinase, putative [Ricinus communis]
20 Hb_005568_060 0.1924771122 - - PREDICTED: mitogen-activated protein kinase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_007951_120 Hb_007951_120 Hb_102100_010 Hb_102100_010 Hb_007951_120--Hb_102100_010 Hb_181824_010 Hb_181824_010 Hb_007951_120--Hb_181824_010 Hb_033149_020 Hb_033149_020 Hb_007951_120--Hb_033149_020 Hb_056012_010 Hb_056012_010 Hb_007951_120--Hb_056012_010 Hb_006414_020 Hb_006414_020 Hb_007951_120--Hb_006414_020 Hb_003216_050 Hb_003216_050 Hb_007951_120--Hb_003216_050 Hb_102100_010--Hb_056012_010 Hb_000015_180 Hb_000015_180 Hb_102100_010--Hb_000015_180 Hb_000220_090 Hb_000220_090 Hb_102100_010--Hb_000220_090 Hb_016404_010 Hb_016404_010 Hb_102100_010--Hb_016404_010 Hb_138575_010 Hb_138575_010 Hb_102100_010--Hb_138575_010 Hb_005568_060 Hb_005568_060 Hb_181824_010--Hb_005568_060 Hb_181824_010--Hb_033149_020 Hb_001846_040 Hb_001846_040 Hb_181824_010--Hb_001846_040 Hb_000045_140 Hb_000045_140 Hb_181824_010--Hb_000045_140 Hb_181824_010--Hb_016404_010 Hb_138628_010 Hb_138628_010 Hb_181824_010--Hb_138628_010 Hb_000610_060 Hb_000610_060 Hb_033149_020--Hb_000610_060 Hb_000451_040 Hb_000451_040 Hb_033149_020--Hb_000451_040 Hb_008380_010 Hb_008380_010 Hb_033149_020--Hb_008380_010 Hb_033149_020--Hb_000045_140 Hb_033149_020--Hb_056012_010 Hb_000803_060 Hb_000803_060 Hb_056012_010--Hb_000803_060 Hb_056012_010--Hb_000220_090 Hb_001258_150 Hb_001258_150 Hb_056012_010--Hb_001258_150 Hb_185513_010 Hb_185513_010 Hb_056012_010--Hb_185513_010 Hb_001662_170 Hb_001662_170 Hb_056012_010--Hb_001662_170 Hb_006414_020--Hb_000803_060 Hb_001489_120 Hb_001489_120 Hb_006414_020--Hb_001489_120 Hb_012787_040 Hb_012787_040 Hb_006414_020--Hb_012787_040 Hb_011360_090 Hb_011360_090 Hb_006414_020--Hb_011360_090 Hb_000103_400 Hb_000103_400 Hb_006414_020--Hb_000103_400 Hb_006414_020--Hb_001258_150 Hb_005568_130 Hb_005568_130 Hb_003216_050--Hb_005568_130 Hb_003216_050--Hb_001662_170 Hb_001053_200 Hb_001053_200 Hb_003216_050--Hb_001053_200 Hb_008103_100 Hb_008103_100 Hb_003216_050--Hb_008103_100 Hb_001409_050 Hb_001409_050 Hb_003216_050--Hb_001409_050 Hb_000649_300 Hb_000649_300 Hb_003216_050--Hb_000649_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.7667 192.332 55.8522 33.0211 13.0903 21.9558
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.467791 0 5.72459 15.8003 5.64428

CAGE analysis