Hb_005400_040

Information

Type -
Description -
Location Contig5400: 26200-29389
Sequence    

Annotation

kegg
ID pmum:103335166
description uncharacterized LOC103335166
nr
ID XP_012092993.1
description PREDICTED: uncharacterized protein At4g04775-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LJH2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16267 PE=4 SV=1
Gene Ontology
ID GO:0008270
description PREDICTED: uncharacterized protein At4g04775-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47840: 25056-26024 , PASA_asmbl_47842: 28436-29358
cDNA
(Sanger)
(ID:Location)		 008_N23r.ab1: 25056-26024

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005400_040 0.0 - - PREDICTED: uncharacterized protein At4g04775-like [Jatropha curcas]
2 Hb_000997_110 0.1278136139 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
3 Hb_001863_150 0.1439963844 - - VQ motif-containing family protein [Populus trichocarpa]
4 Hb_005288_020 0.1551255735 transcription factor TF Family: zf-HD transcription factor, putative [Ricinus communis]
5 Hb_005539_020 0.1720226073 - - -
6 Hb_005147_040 0.1756540405 - - PREDICTED: uncharacterized protein LOC105629674 [Jatropha curcas]
7 Hb_000976_290 0.1793617693 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105646228 [Jatropha curcas]
8 Hb_000062_080 0.1803351178 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
9 Hb_003371_120 0.1851564229 - - hypothetical protein JCGZ_05278 [Jatropha curcas]
10 Hb_004724_130 0.1902808987 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14 [Jatropha curcas]
11 Hb_129204_060 0.1904873011 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
12 Hb_000802_190 0.192040354 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
13 Hb_002477_120 0.1944315441 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
14 Hb_127599_010 0.1952623753 - - hypothetical protein CISIN_1g0010462mg, partial [Citrus sinensis]
15 Hb_000010_350 0.1953343859 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
16 Hb_002235_240 0.1967216858 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
17 Hb_007379_020 0.2001558728 - - hypothetical protein JCGZ_25958 [Jatropha curcas]
18 Hb_000272_120 0.2026522209 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR18 isoform X2 [Jatropha curcas]
19 Hb_002918_150 0.2027070041 transcription factor TF Family: ERF ethylene-responsive element binding protein 1 [Hevea brasiliensis]
20 Hb_001141_360 0.2050444504 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]

Gene co-expression network

sample Hb_005400_040 Hb_005400_040 Hb_000997_110 Hb_000997_110 Hb_005400_040--Hb_000997_110 Hb_001863_150 Hb_001863_150 Hb_005400_040--Hb_001863_150 Hb_005288_020 Hb_005288_020 Hb_005400_040--Hb_005288_020 Hb_005539_020 Hb_005539_020 Hb_005400_040--Hb_005539_020 Hb_005147_040 Hb_005147_040 Hb_005400_040--Hb_005147_040 Hb_000976_290 Hb_000976_290 Hb_005400_040--Hb_000976_290 Hb_003371_120 Hb_003371_120 Hb_000997_110--Hb_003371_120 Hb_000010_350 Hb_000010_350 Hb_000997_110--Hb_000010_350 Hb_000997_110--Hb_005147_040 Hb_000997_110--Hb_000976_290 Hb_002918_150 Hb_002918_150 Hb_000997_110--Hb_002918_150 Hb_002235_240 Hb_002235_240 Hb_001863_150--Hb_002235_240 Hb_001141_360 Hb_001141_360 Hb_001863_150--Hb_001141_360 Hb_004724_130 Hb_004724_130 Hb_001863_150--Hb_004724_130 Hb_042175_010 Hb_042175_010 Hb_001863_150--Hb_042175_010 Hb_009838_060 Hb_009838_060 Hb_001863_150--Hb_009838_060 Hb_006846_020 Hb_006846_020 Hb_005288_020--Hb_006846_020 Hb_005288_020--Hb_005539_020 Hb_000802_190 Hb_000802_190 Hb_005288_020--Hb_000802_190 Hb_000062_590 Hb_000062_590 Hb_005288_020--Hb_000062_590 Hb_002477_120 Hb_002477_120 Hb_005288_020--Hb_002477_120 Hb_000526_030 Hb_000526_030 Hb_005539_020--Hb_000526_030 Hb_052764_030 Hb_052764_030 Hb_005539_020--Hb_052764_030 Hb_000023_350 Hb_000023_350 Hb_005539_020--Hb_000023_350 Hb_005539_020--Hb_000802_190 Hb_002631_040 Hb_002631_040 Hb_005539_020--Hb_002631_040 Hb_004319_070 Hb_004319_070 Hb_005539_020--Hb_004319_070 Hb_020805_170 Hb_020805_170 Hb_005147_040--Hb_020805_170 Hb_005147_040--Hb_000010_350 Hb_000062_080 Hb_000062_080 Hb_005147_040--Hb_000062_080 Hb_005147_040--Hb_001863_150 Hb_000107_440 Hb_000107_440 Hb_005147_040--Hb_000107_440 Hb_000645_240 Hb_000645_240 Hb_005147_040--Hb_000645_240 Hb_000976_290--Hb_000062_080 Hb_127599_010 Hb_127599_010 Hb_000976_290--Hb_127599_010 Hb_003494_060 Hb_003494_060 Hb_000976_290--Hb_003494_060 Hb_000976_290--Hb_000010_350 Hb_002026_060 Hb_002026_060 Hb_000976_290--Hb_002026_060 Hb_000976_290--Hb_001141_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.565 126.092 27.6901 14.3301 10.8249 6.22549
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.6145 12.2834 10.1147 41.8943 1.21696

CAGE analysis