Hb_000062_590

Information

Type -
Description -
Location Contig62: 394781-399310
Sequence    

Annotation

kegg
ID rcu:RCOM_1080870
description ubiquitin-protein ligase, putative
nr
ID XP_002514944.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID O48700
description U-box domain-containing protein 6 OS=Arabidopsis thaliana GN=PUB6 PE=2 SV=2
trembl
ID B9RMH5
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1080870 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51484: 394637-399133 , PASA_asmbl_51485: 394637-399189 , PASA_asmbl_51486: 395751-395859
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_590 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_001085_300 0.1414842414 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
3 Hb_001195_350 0.1439753364 - - hypothetical protein JCGZ_04423 [Jatropha curcas]
4 Hb_000000_340 0.1443564091 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 29-like isoform X1 [Jatropha curcas]
5 Hb_004899_330 0.1468977117 transcription factor TF Family: Tify plastid jasmonates ZIM-domain protein [Hevea brasiliensis]
6 Hb_000866_140 0.1483441976 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
7 Hb_005488_120 0.1514818891 - - PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]
8 Hb_006846_020 0.1530938193 - - PREDICTED: uncharacterized protein LOC105648685 [Jatropha curcas]
9 Hb_007007_080 0.1577869251 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000272_110 0.1589570708 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
11 Hb_010068_070 0.1593174332 - - calcium-dependent protein kinase, putative [Ricinus communis]
12 Hb_000953_040 0.159761565 - - hypothetical protein OsJ_19135 [Oryza sativa Japonica Group]
13 Hb_000840_070 0.1605003176 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
14 Hb_000156_090 0.1655404662 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 isoform X1 [Jatropha curcas]
15 Hb_014068_050 0.1657033241 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
16 Hb_004837_220 0.1667555332 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
17 Hb_174829_020 0.1672493339 transcription factor TF Family: C2C2-Dof cyclic dof factor 2 [Jatropha curcas]
18 Hb_004117_170 0.1672884872 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
19 Hb_000802_190 0.1677062085 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
20 Hb_056196_060 0.1681742958 - - hexokinase [Manihot esculenta]

Gene co-expression network

sample Hb_000062_590 Hb_000062_590 Hb_001085_300 Hb_001085_300 Hb_000062_590--Hb_001085_300 Hb_001195_350 Hb_001195_350 Hb_000062_590--Hb_001195_350 Hb_000000_340 Hb_000000_340 Hb_000062_590--Hb_000000_340 Hb_004899_330 Hb_004899_330 Hb_000062_590--Hb_004899_330 Hb_000866_140 Hb_000866_140 Hb_000062_590--Hb_000866_140 Hb_005488_120 Hb_005488_120 Hb_000062_590--Hb_005488_120 Hb_056196_060 Hb_056196_060 Hb_001085_300--Hb_056196_060 Hb_000272_110 Hb_000272_110 Hb_001085_300--Hb_000272_110 Hb_008112_010 Hb_008112_010 Hb_001085_300--Hb_008112_010 Hb_001318_150 Hb_001318_150 Hb_001085_300--Hb_001318_150 Hb_003018_030 Hb_003018_030 Hb_001085_300--Hb_003018_030 Hb_004837_220 Hb_004837_220 Hb_001085_300--Hb_004837_220 Hb_000371_060 Hb_000371_060 Hb_001195_350--Hb_000371_060 Hb_010068_070 Hb_010068_070 Hb_001195_350--Hb_010068_070 Hb_004631_110 Hb_004631_110 Hb_001195_350--Hb_004631_110 Hb_000840_070 Hb_000840_070 Hb_001195_350--Hb_000840_070 Hb_033363_010 Hb_033363_010 Hb_001195_350--Hb_033363_010 Hb_002524_020 Hb_002524_020 Hb_001195_350--Hb_002524_020 Hb_000890_160 Hb_000890_160 Hb_000000_340--Hb_000890_160 Hb_000000_340--Hb_010068_070 Hb_000000_340--Hb_000866_140 Hb_000000_340--Hb_004837_220 Hb_001376_010 Hb_001376_010 Hb_000000_340--Hb_001376_010 Hb_008725_050 Hb_008725_050 Hb_000000_340--Hb_008725_050 Hb_001638_030 Hb_001638_030 Hb_004899_330--Hb_001638_030 Hb_174829_020 Hb_174829_020 Hb_004899_330--Hb_174829_020 Hb_001484_020 Hb_001484_020 Hb_004899_330--Hb_001484_020 Hb_002685_200 Hb_002685_200 Hb_004899_330--Hb_002685_200 Hb_001235_170 Hb_001235_170 Hb_004899_330--Hb_001235_170 Hb_003428_090 Hb_003428_090 Hb_000866_140--Hb_003428_090 Hb_000866_140--Hb_003018_030 Hb_000866_140--Hb_000890_160 Hb_000156_090 Hb_000156_090 Hb_000866_140--Hb_000156_090 Hb_000866_140--Hb_008725_050 Hb_002107_100 Hb_002107_100 Hb_000866_140--Hb_002107_100 Hb_000109_130 Hb_000109_130 Hb_005488_120--Hb_000109_130 Hb_000084_240 Hb_000084_240 Hb_005488_120--Hb_000084_240 Hb_001246_160 Hb_001246_160 Hb_005488_120--Hb_001246_160 Hb_000186_200 Hb_000186_200 Hb_005488_120--Hb_000186_200 Hb_005488_120--Hb_002685_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.2858 18.2337 12.4785 8.02749 1.64389 2.94623
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.72218 3.3377 3.87771 9.64699 1.00816

CAGE analysis