Hb_004899_330

Information

Type transcription factor
Description TF Family: Tify
Location Contig4899: 267551-270006
Sequence    

Annotation

kegg
ID rcu:RCOM_0710780
description hypothetical protein
nr
ID ADI39634.1
description plastid jasmonates ZIM-domain protein [Hevea brasiliensis]
swissprot
ID Q9LMA8
description Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1
trembl
ID D8V3L7
description Plastid jasmonates ZIM-domain protein OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45223: 267568-269987 , PASA_asmbl_45224: 267568-269987
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004899_330 0.0 transcription factor TF Family: Tify plastid jasmonates ZIM-domain protein [Hevea brasiliensis]
2 Hb_000062_590 0.1468977117 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_001638_030 0.1497181087 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
4 Hb_174829_020 0.1513639716 transcription factor TF Family: C2C2-Dof cyclic dof factor 2 [Jatropha curcas]
5 Hb_001484_020 0.1537544703 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
6 Hb_002685_200 0.1626987684 - - PREDICTED: uncharacterized protein LOC105632583 [Jatropha curcas]
7 Hb_001235_170 0.1628658113 - - PREDICTED: putative glucuronosyltransferase PGSIP8 [Jatropha curcas]
8 Hb_001085_300 0.163978503 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
9 Hb_005488_120 0.1643208529 - - PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]
10 Hb_000084_240 0.1661174129 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
11 Hb_000011_050 0.169739677 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
12 Hb_002897_100 0.1738000312 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
13 Hb_000000_340 0.1742874041 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 29-like isoform X1 [Jatropha curcas]
14 Hb_000638_280 0.1749823834 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
15 Hb_001376_010 0.1777446539 - - diacylglycerol kinase, alpha, putative [Ricinus communis]
16 Hb_000272_110 0.1792462103 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
17 Hb_000512_010 0.1807800329 - - PREDICTED: uncharacterized protein LOC105650728 [Jatropha curcas]
18 Hb_000019_040 0.183119547 - - PREDICTED: mitochondrial phosphate carrier protein 3, mitochondrial [Jatropha curcas]
19 Hb_005539_020 0.183322202 - - -
20 Hb_052764_030 0.1841440093 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]

Gene co-expression network

sample Hb_004899_330 Hb_004899_330 Hb_000062_590 Hb_000062_590 Hb_004899_330--Hb_000062_590 Hb_001638_030 Hb_001638_030 Hb_004899_330--Hb_001638_030 Hb_174829_020 Hb_174829_020 Hb_004899_330--Hb_174829_020 Hb_001484_020 Hb_001484_020 Hb_004899_330--Hb_001484_020 Hb_002685_200 Hb_002685_200 Hb_004899_330--Hb_002685_200 Hb_001235_170 Hb_001235_170 Hb_004899_330--Hb_001235_170 Hb_001085_300 Hb_001085_300 Hb_000062_590--Hb_001085_300 Hb_001195_350 Hb_001195_350 Hb_000062_590--Hb_001195_350 Hb_000000_340 Hb_000000_340 Hb_000062_590--Hb_000000_340 Hb_000866_140 Hb_000866_140 Hb_000062_590--Hb_000866_140 Hb_005488_120 Hb_005488_120 Hb_000062_590--Hb_005488_120 Hb_001638_030--Hb_001235_170 Hb_000925_030 Hb_000925_030 Hb_001638_030--Hb_000925_030 Hb_001638_030--Hb_002685_200 Hb_006538_130 Hb_006538_130 Hb_001638_030--Hb_006538_130 Hb_001376_010 Hb_001376_010 Hb_001638_030--Hb_001376_010 Hb_003147_060 Hb_003147_060 Hb_001638_030--Hb_003147_060 Hb_000512_010 Hb_000512_010 Hb_174829_020--Hb_000512_010 Hb_002311_480 Hb_002311_480 Hb_174829_020--Hb_002311_480 Hb_000291_010 Hb_000291_010 Hb_174829_020--Hb_000291_010 Hb_052764_030 Hb_052764_030 Hb_174829_020--Hb_052764_030 Hb_000019_040 Hb_000019_040 Hb_174829_020--Hb_000019_040 Hb_000011_050 Hb_000011_050 Hb_174829_020--Hb_000011_050 Hb_000077_390 Hb_000077_390 Hb_001484_020--Hb_000077_390 Hb_000976_280 Hb_000976_280 Hb_001484_020--Hb_000976_280 Hb_003077_050 Hb_003077_050 Hb_001484_020--Hb_003077_050 Hb_011631_010 Hb_011631_010 Hb_001484_020--Hb_011631_010 Hb_001484_020--Hb_000019_040 Hb_013241_010 Hb_013241_010 Hb_001484_020--Hb_013241_010 Hb_000179_240 Hb_000179_240 Hb_002685_200--Hb_000179_240 Hb_012634_020 Hb_012634_020 Hb_002685_200--Hb_012634_020 Hb_002685_200--Hb_003077_050 Hb_002701_210 Hb_002701_210 Hb_002685_200--Hb_002701_210 Hb_000084_240 Hb_000084_240 Hb_002685_200--Hb_000084_240 Hb_171900_020 Hb_171900_020 Hb_001235_170--Hb_171900_020 Hb_005146_080 Hb_005146_080 Hb_001235_170--Hb_005146_080 Hb_001235_170--Hb_002685_200 Hb_014068_050 Hb_014068_050 Hb_001235_170--Hb_014068_050 Hb_001235_170--Hb_001376_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
79.9988 409.42 346.971 113.466 28.9477 62.5526
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
154.705 55.4767 78.9327 145.638 20.0361

CAGE analysis