Hb_005488_120

Information

Type -
Description -
Location Contig5488: 104522-105234
Sequence    

Annotation

kegg
ID pop:POPTR_0013s07370g
description POPTRDRAFT_571392; DNA polymerase delta subunit 4 family protein
nr
ID XP_012070271.1
description PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]
swissprot
ID Q9CWP8
description DNA polymerase delta subunit 4 OS=Mus musculus GN=Pold4 PE=3 SV=1
trembl
ID A0A067L638
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02579 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dna polymerase delta subunit 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48115: 104689-105255
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005488_120 0.0 - - PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]
2 Hb_000109_130 0.1382613266 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 [Jatropha curcas]
3 Hb_000062_590 0.1514818891 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_000084_240 0.1560393902 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
5 Hb_001246_160 0.1569072179 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
6 Hb_000186_200 0.163696561 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
7 Hb_002685_200 0.1641807788 - - PREDICTED: uncharacterized protein LOC105632583 [Jatropha curcas]
8 Hb_004899_330 0.1643208529 transcription factor TF Family: Tify plastid jasmonates ZIM-domain protein [Hevea brasiliensis]
9 Hb_000179_240 0.1663722018 - - PREDICTED: threonine synthase 1, chloroplastic [Jatropha curcas]
10 Hb_010368_080 0.1673602483 - - PREDICTED: uncharacterized protein LOC105630287 [Jatropha curcas]
11 Hb_000925_030 0.1694981585 - - ATP-dependent RNA helicase, putative [Ricinus communis]
12 Hb_000069_730 0.1701618704 transcription factor TF Family: bZIP PREDICTED: common plant regulatory factor 1-like isoform X1 [Jatropha curcas]
13 Hb_000000_340 0.1705181687 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 29-like isoform X1 [Jatropha curcas]
14 Hb_000045_260 0.1759807528 - - protein with unknown function [Ricinus communis]
15 Hb_001009_090 0.1767725914 - - CDK protein [Hevea brasiliensis]
16 Hb_000749_070 0.1774576956 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
17 Hb_000152_760 0.1785124873 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007007_080 0.1791961589 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000163_230 0.1794417158 - - Phytochrome A-associated F-box protein, putative [Ricinus communis]
20 Hb_003078_030 0.1810622744 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]

Gene co-expression network

sample Hb_005488_120 Hb_005488_120 Hb_000109_130 Hb_000109_130 Hb_005488_120--Hb_000109_130 Hb_000062_590 Hb_000062_590 Hb_005488_120--Hb_000062_590 Hb_000084_240 Hb_000084_240 Hb_005488_120--Hb_000084_240 Hb_001246_160 Hb_001246_160 Hb_005488_120--Hb_001246_160 Hb_000186_200 Hb_000186_200 Hb_005488_120--Hb_000186_200 Hb_002685_200 Hb_002685_200 Hb_005488_120--Hb_002685_200 Hb_000076_100 Hb_000076_100 Hb_000109_130--Hb_000076_100 Hb_000109_130--Hb_001246_160 Hb_006545_020 Hb_006545_020 Hb_000109_130--Hb_006545_020 Hb_004586_130 Hb_004586_130 Hb_000109_130--Hb_004586_130 Hb_010368_080 Hb_010368_080 Hb_000109_130--Hb_010368_080 Hb_001085_300 Hb_001085_300 Hb_000062_590--Hb_001085_300 Hb_001195_350 Hb_001195_350 Hb_000062_590--Hb_001195_350 Hb_000000_340 Hb_000000_340 Hb_000062_590--Hb_000000_340 Hb_004899_330 Hb_004899_330 Hb_000062_590--Hb_004899_330 Hb_000866_140 Hb_000866_140 Hb_000062_590--Hb_000866_140 Hb_005499_010 Hb_005499_010 Hb_000084_240--Hb_005499_010 Hb_000084_240--Hb_000186_200 Hb_002897_050 Hb_002897_050 Hb_000084_240--Hb_002897_050 Hb_000045_260 Hb_000045_260 Hb_000084_240--Hb_000045_260 Hb_002107_060 Hb_002107_060 Hb_000084_240--Hb_002107_060 Hb_011631_010 Hb_011631_010 Hb_000084_240--Hb_011631_010 Hb_000749_070 Hb_000749_070 Hb_001246_160--Hb_000749_070 Hb_000009_200 Hb_000009_200 Hb_001246_160--Hb_000009_200 Hb_005394_010 Hb_005394_010 Hb_001246_160--Hb_005394_010 Hb_002122_030 Hb_002122_030 Hb_001246_160--Hb_002122_030 Hb_018790_050 Hb_018790_050 Hb_001246_160--Hb_018790_050 Hb_056196_060 Hb_056196_060 Hb_001246_160--Hb_056196_060 Hb_002701_210 Hb_002701_210 Hb_000186_200--Hb_002701_210 Hb_003078_030 Hb_003078_030 Hb_000186_200--Hb_003078_030 Hb_001009_090 Hb_001009_090 Hb_000186_200--Hb_001009_090 Hb_000186_200--Hb_000045_260 Hb_000163_230 Hb_000163_230 Hb_000186_200--Hb_000163_230 Hb_000179_240 Hb_000179_240 Hb_002685_200--Hb_000179_240 Hb_001638_030 Hb_001638_030 Hb_002685_200--Hb_001638_030 Hb_012634_020 Hb_012634_020 Hb_002685_200--Hb_012634_020 Hb_003077_050 Hb_003077_050 Hb_002685_200--Hb_003077_050 Hb_002685_200--Hb_002701_210 Hb_002685_200--Hb_000084_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.41046 35.5422 25.6176 9.81193 5.4257 6.27363
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.66488 5.53841 3.55321 7.83216 0.756191

CAGE analysis