Hb_006545_020

Information

Type -
Description -
Location Contig6545: 40426-52635
Sequence    

Annotation

kegg
ID rcu:RCOM_0615790
description multicopper oxidase, putative (EC:1.10.3.3)
nr
ID XP_002528421.1
description multicopper oxidase, putative [Ricinus communis]
swissprot
ID Q00624
description L-ascorbate oxidase homolog OS=Brassica napus GN=Bp10 PE=2 SV=1
trembl
ID B9SR02
description Multicopper oxidase, putative OS=Ricinus communis GN=RCOM_0615790 PE=4 SV=1
Gene Ontology
ID GO:0005507
description l-ascorbate oxidase homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52638: 48333-52630
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006545_020 0.0 - - multicopper oxidase, putative [Ricinus communis]
2 Hb_000109_130 0.1588740289 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 [Jatropha curcas]
3 Hb_002897_100 0.1851598546 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
4 Hb_000185_230 0.1894486567 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_004193_010 0.1904126942 - - PREDICTED: uncharacterized protein LOC105650669 [Jatropha curcas]
6 Hb_001059_090 0.1926885952 - - PREDICTED: F-box protein At1g61340 [Jatropha curcas]
7 Hb_000272_110 0.1955773785 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
8 Hb_000749_070 0.1974571502 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
9 Hb_001246_160 0.1985968815 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
10 Hb_005883_070 0.1986579459 - - PREDICTED: probable myosin-binding protein 5 [Jatropha curcas]
11 Hb_000076_100 0.2034896713 - - PREDICTED: septum-promoting GTP-binding protein 1 [Jatropha curcas]
12 Hb_143813_020 0.2067411419 transcription factor TF Family: WRKY hypothetical protein POPTR_0006s10950g [Populus trichocarpa]
13 Hb_004586_130 0.2070829976 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000003_240 0.2093235798 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002151_130 0.2102242084 - - 12-oxophytodienoate reductase [Hevea brasiliensis]
16 Hb_006120_150 0.2103966978 - - invertase [Hevea brasiliensis]
17 Hb_007253_010 0.2168364597 - - syntaxin, putative [Ricinus communis]
18 Hb_012545_030 0.219067665 - - Polyadenylate-binding protein RBP47C [Glycine soja]
19 Hb_001636_060 0.2202627502 - - Putative serine/threonine-protein kinase-like protein CCR3 [Glycine soja]
20 Hb_001016_140 0.2208674975 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]

Gene co-expression network

sample Hb_006545_020 Hb_006545_020 Hb_000109_130 Hb_000109_130 Hb_006545_020--Hb_000109_130 Hb_002897_100 Hb_002897_100 Hb_006545_020--Hb_002897_100 Hb_000185_230 Hb_000185_230 Hb_006545_020--Hb_000185_230 Hb_004193_010 Hb_004193_010 Hb_006545_020--Hb_004193_010 Hb_001059_090 Hb_001059_090 Hb_006545_020--Hb_001059_090 Hb_000272_110 Hb_000272_110 Hb_006545_020--Hb_000272_110 Hb_000076_100 Hb_000076_100 Hb_000109_130--Hb_000076_100 Hb_005488_120 Hb_005488_120 Hb_000109_130--Hb_005488_120 Hb_001246_160 Hb_001246_160 Hb_000109_130--Hb_001246_160 Hb_004586_130 Hb_004586_130 Hb_000109_130--Hb_004586_130 Hb_010368_080 Hb_010368_080 Hb_000109_130--Hb_010368_080 Hb_001085_300 Hb_001085_300 Hb_002897_100--Hb_001085_300 Hb_007253_010 Hb_007253_010 Hb_002897_100--Hb_007253_010 Hb_000152_760 Hb_000152_760 Hb_002897_100--Hb_000152_760 Hb_002107_100 Hb_002107_100 Hb_002897_100--Hb_002107_100 Hb_104920_010 Hb_104920_010 Hb_002897_100--Hb_104920_010 Hb_000421_230 Hb_000421_230 Hb_002897_100--Hb_000421_230 Hb_001214_190 Hb_001214_190 Hb_000185_230--Hb_001214_190 Hb_005883_070 Hb_005883_070 Hb_000185_230--Hb_005883_070 Hb_000185_230--Hb_000076_100 Hb_124951_010 Hb_124951_010 Hb_000185_230--Hb_124951_010 Hb_000185_230--Hb_001059_090 Hb_176472_020 Hb_176472_020 Hb_000185_230--Hb_176472_020 Hb_143813_020 Hb_143813_020 Hb_004193_010--Hb_143813_020 Hb_006120_150 Hb_006120_150 Hb_004193_010--Hb_006120_150 Hb_069591_010 Hb_069591_010 Hb_004193_010--Hb_069591_010 Hb_002478_040 Hb_002478_040 Hb_004193_010--Hb_002478_040 Hb_000979_060 Hb_000979_060 Hb_004193_010--Hb_000979_060 Hb_001059_090--Hb_004586_130 Hb_000221_230 Hb_000221_230 Hb_001059_090--Hb_000221_230 Hb_001059_090--Hb_005883_070 Hb_002151_130 Hb_002151_130 Hb_001059_090--Hb_002151_130 Hb_001059_090--Hb_000109_130 Hb_000272_110--Hb_001085_300 Hb_007007_080 Hb_007007_080 Hb_000272_110--Hb_007007_080 Hb_001318_150 Hb_001318_150 Hb_000272_110--Hb_001318_150 Hb_000272_110--Hb_001246_160 Hb_001898_130 Hb_001898_130 Hb_000272_110--Hb_001898_130 Hb_002876_070 Hb_002876_070 Hb_000272_110--Hb_002876_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.57317 42.0777 54.9166 21.681 6.98055 1.05573
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.80688 4.70099 17.1181 8.01359 1.79948

CAGE analysis