Hb_001059_090

Information

Type -
Description -
Location Contig1059: 90967-92363
Sequence    

Annotation

kegg
ID rcu:RCOM_1095840
description hypothetical protein
nr
ID XP_012091491.1
description PREDICTED: F-box protein At1g61340 [Jatropha curcas]
swissprot
ID Q8GX77
description F-box protein At1g61340 OS=Arabidopsis thaliana GN=At1g61340 PE=2 SV=1
trembl
ID A0A067JMY6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21355 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01939: 90985-92723
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001059_090 0.0 - - PREDICTED: F-box protein At1g61340 [Jatropha curcas]
2 Hb_004586_130 0.1364795157 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000185_230 0.1549307428 - - WD-repeat protein, putative [Ricinus communis]
4 Hb_000221_230 0.1580799533 transcription factor TF Family: Jumonji PREDICTED: F-box protein At1g78280 [Jatropha curcas]
5 Hb_005883_070 0.1678578944 - - PREDICTED: probable myosin-binding protein 5 [Jatropha curcas]
6 Hb_002151_130 0.1688016755 - - 12-oxophytodienoate reductase [Hevea brasiliensis]
7 Hb_000109_130 0.169148354 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 [Jatropha curcas]
8 Hb_015026_040 0.1739854012 - - PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]
9 Hb_000283_100 0.1771695465 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X2 [Jatropha curcas]
10 Hb_002007_070 0.185587837 - - PREDICTED: serrate RNA effector molecule homolog [Jatropha curcas]
11 Hb_010126_030 0.1855976396 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 isoform X1 [Jatropha curcas]
12 Hb_000680_180 0.1891719768 - - hypothetical protein JCGZ_15248 [Jatropha curcas]
13 Hb_001769_110 0.190866341 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
14 Hb_006545_020 0.1926885952 - - multicopper oxidase, putative [Ricinus communis]
15 Hb_000003_240 0.1933999086 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000162_130 0.1962846538 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003226_080 0.1967087826 - - PREDICTED: RING-H2 finger protein ATL5-like [Jatropha curcas]
18 Hb_001246_160 0.2023002903 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
19 Hb_005488_120 0.2027561013 - - PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]
20 Hb_001579_070 0.2107219313 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]

Gene co-expression network

sample Hb_001059_090 Hb_001059_090 Hb_004586_130 Hb_004586_130 Hb_001059_090--Hb_004586_130 Hb_000185_230 Hb_000185_230 Hb_001059_090--Hb_000185_230 Hb_000221_230 Hb_000221_230 Hb_001059_090--Hb_000221_230 Hb_005883_070 Hb_005883_070 Hb_001059_090--Hb_005883_070 Hb_002151_130 Hb_002151_130 Hb_001059_090--Hb_002151_130 Hb_000109_130 Hb_000109_130 Hb_001059_090--Hb_000109_130 Hb_000283_100 Hb_000283_100 Hb_004586_130--Hb_000283_100 Hb_004586_130--Hb_002151_130 Hb_010126_030 Hb_010126_030 Hb_004586_130--Hb_010126_030 Hb_004586_130--Hb_000221_230 Hb_002876_070 Hb_002876_070 Hb_004586_130--Hb_002876_070 Hb_001989_060 Hb_001989_060 Hb_004586_130--Hb_001989_060 Hb_001214_190 Hb_001214_190 Hb_000185_230--Hb_001214_190 Hb_000185_230--Hb_005883_070 Hb_000076_100 Hb_000076_100 Hb_000185_230--Hb_000076_100 Hb_124951_010 Hb_124951_010 Hb_000185_230--Hb_124951_010 Hb_176472_020 Hb_176472_020 Hb_000185_230--Hb_176472_020 Hb_015026_040 Hb_015026_040 Hb_000221_230--Hb_015026_040 Hb_008020_020 Hb_008020_020 Hb_000221_230--Hb_008020_020 Hb_005394_010 Hb_005394_010 Hb_000221_230--Hb_005394_010 Hb_000680_180 Hb_000680_180 Hb_000221_230--Hb_000680_180 Hb_041895_040 Hb_041895_040 Hb_000221_230--Hb_041895_040 Hb_005883_070--Hb_000109_130 Hb_006775_070 Hb_006775_070 Hb_005883_070--Hb_006775_070 Hb_006545_020 Hb_006545_020 Hb_005883_070--Hb_006545_020 Hb_047442_010 Hb_047442_010 Hb_005883_070--Hb_047442_010 Hb_124677_020 Hb_124677_020 Hb_002151_130--Hb_124677_020 Hb_000984_290 Hb_000984_290 Hb_002151_130--Hb_000984_290 Hb_061908_030 Hb_061908_030 Hb_002151_130--Hb_061908_030 Hb_002151_130--Hb_010126_030 Hb_002151_130--Hb_002876_070 Hb_000109_130--Hb_000076_100 Hb_005488_120 Hb_005488_120 Hb_000109_130--Hb_005488_120 Hb_001246_160 Hb_001246_160 Hb_000109_130--Hb_001246_160 Hb_000109_130--Hb_006545_020 Hb_000109_130--Hb_004586_130 Hb_010368_080 Hb_010368_080 Hb_000109_130--Hb_010368_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.95646 224.876 240.087 75.9919 45.0722 14.1809
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.273 18.6327 21.8926 6.82501 3.77903

CAGE analysis