Hb_005883_070

Information

Type -
Description -
Location Contig5883: 70080-73080
Sequence    

Annotation

kegg
ID rcu:RCOM_1512920
description hypothetical protein
nr
ID XP_012080167.1
description PREDICTED: probable myosin-binding protein 5 [Jatropha curcas]
swissprot
ID F4HVS6
description Probable myosin-binding protein 6 OS=Arabidopsis thaliana GN=MYOB6 PE=2 SV=1
trembl
ID B9R908
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1512920 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50042: 71664-71997
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005883_070 0.0 - - PREDICTED: probable myosin-binding protein 5 [Jatropha curcas]
2 Hb_000185_230 0.1363547344 - - WD-repeat protein, putative [Ricinus communis]
3 Hb_001059_090 0.1678578944 - - PREDICTED: F-box protein At1g61340 [Jatropha curcas]
4 Hb_000109_130 0.1887700293 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 [Jatropha curcas]
5 Hb_006775_070 0.1948858661 - - zinc finger protein, putative [Ricinus communis]
6 Hb_006545_020 0.1986579459 - - multicopper oxidase, putative [Ricinus communis]
7 Hb_047442_010 0.2011128536 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
8 Hb_002151_130 0.2021935351 - - 12-oxophytodienoate reductase [Hevea brasiliensis]
9 Hb_015026_040 0.2030297361 - - PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]
10 Hb_004586_130 0.2037910839 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000076_100 0.2054163955 - - PREDICTED: septum-promoting GTP-binding protein 1 [Jatropha curcas]
12 Hb_001711_010 0.208191585 - - -
13 Hb_124951_010 0.2085346892 - - chitinase-like protein [Hevea brasiliensis]
14 Hb_005394_010 0.2092514691 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
15 Hb_000221_230 0.2099203141 transcription factor TF Family: Jumonji PREDICTED: F-box protein At1g78280 [Jatropha curcas]
16 Hb_008173_060 0.2106916975 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
17 Hb_002600_130 0.213556727 - - PREDICTED: uncharacterized protein LOC105646808 [Jatropha curcas]
18 Hb_000134_030 0.2152710186 - - PREDICTED: sister chromatid cohesion 1 protein 3-like [Jatropha curcas]
19 Hb_001214_190 0.216259168 - - hypothetical protein JCGZ_25001 [Jatropha curcas]
20 Hb_008020_020 0.2163346888 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005883_070 Hb_005883_070 Hb_000185_230 Hb_000185_230 Hb_005883_070--Hb_000185_230 Hb_001059_090 Hb_001059_090 Hb_005883_070--Hb_001059_090 Hb_000109_130 Hb_000109_130 Hb_005883_070--Hb_000109_130 Hb_006775_070 Hb_006775_070 Hb_005883_070--Hb_006775_070 Hb_006545_020 Hb_006545_020 Hb_005883_070--Hb_006545_020 Hb_047442_010 Hb_047442_010 Hb_005883_070--Hb_047442_010 Hb_001214_190 Hb_001214_190 Hb_000185_230--Hb_001214_190 Hb_000076_100 Hb_000076_100 Hb_000185_230--Hb_000076_100 Hb_124951_010 Hb_124951_010 Hb_000185_230--Hb_124951_010 Hb_000185_230--Hb_001059_090 Hb_176472_020 Hb_176472_020 Hb_000185_230--Hb_176472_020 Hb_004586_130 Hb_004586_130 Hb_001059_090--Hb_004586_130 Hb_000221_230 Hb_000221_230 Hb_001059_090--Hb_000221_230 Hb_002151_130 Hb_002151_130 Hb_001059_090--Hb_002151_130 Hb_001059_090--Hb_000109_130 Hb_000109_130--Hb_000076_100 Hb_005488_120 Hb_005488_120 Hb_000109_130--Hb_005488_120 Hb_001246_160 Hb_001246_160 Hb_000109_130--Hb_001246_160 Hb_000109_130--Hb_006545_020 Hb_000109_130--Hb_004586_130 Hb_010368_080 Hb_010368_080 Hb_000109_130--Hb_010368_080 Hb_006775_070--Hb_176472_020 Hb_000959_190 Hb_000959_190 Hb_006775_070--Hb_000959_190 Hb_000260_610 Hb_000260_610 Hb_006775_070--Hb_000260_610 Hb_012787_030 Hb_012787_030 Hb_006775_070--Hb_012787_030 Hb_000732_030 Hb_000732_030 Hb_006775_070--Hb_000732_030 Hb_002518_200 Hb_002518_200 Hb_006775_070--Hb_002518_200 Hb_002897_100 Hb_002897_100 Hb_006545_020--Hb_002897_100 Hb_006545_020--Hb_000185_230 Hb_004193_010 Hb_004193_010 Hb_006545_020--Hb_004193_010 Hb_006545_020--Hb_001059_090 Hb_000272_110 Hb_000272_110 Hb_006545_020--Hb_000272_110 Hb_011671_110 Hb_011671_110 Hb_047442_010--Hb_011671_110 Hb_002965_070 Hb_002965_070 Hb_047442_010--Hb_002965_070 Hb_005394_010 Hb_005394_010 Hb_047442_010--Hb_005394_010 Hb_000317_190 Hb_000317_190 Hb_047442_010--Hb_000317_190 Hb_000111_390 Hb_000111_390 Hb_047442_010--Hb_000111_390 Hb_001894_160 Hb_001894_160 Hb_047442_010--Hb_001894_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0818601 0.371472 0.593243 0.156921 0.0960377 0.0177044
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0219357 0.0690392 0.0327523 0.0549204 0

CAGE analysis