Hb_002897_100

Information

Type transcription factor
Description TF Family: WRKY
Location Contig2897: 106432-107921
Sequence    

Annotation

kegg
ID rcu:RCOM_0689800
description WRKY transcription factor, putative
nr
ID XP_002520871.1
description WRKY transcription factor, putative [Ricinus communis]
swissprot
ID Q9LY00
description Probable WRKY transcription factor 70 OS=Arabidopsis thaliana GN=WRKY70 PE=2 SV=1
trembl
ID B9S4F2
description WRKY transcription factor, putative OS=Ricinus communis GN=RCOM_0689800 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 70

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30327: 106529-107010
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002897_100 0.0 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
2 Hb_001085_300 0.1384099392 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
3 Hb_007253_010 0.1440324257 - - syntaxin, putative [Ricinus communis]
4 Hb_000152_760 0.1506413984 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002107_100 0.153438495 - - PREDICTED: la-related protein 1C-like isoform X3 [Jatropha curcas]
6 Hb_104920_010 0.1549059421 - - hypothetical protein VITISV_031859 [Vitis vinifera]
7 Hb_000421_230 0.1558402487 - - retinal degeneration B beta, putative [Ricinus communis]
8 Hb_000045_260 0.1563862312 - - protein with unknown function [Ricinus communis]
9 Hb_006120_150 0.1571758165 - - invertase [Hevea brasiliensis]
10 Hb_003018_030 0.1580056395 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
11 Hb_000866_140 0.1605429988 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
12 Hb_000979_060 0.1620356302 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 2-like [Gossypium raimondii]
13 Hb_000272_110 0.1638995978 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
14 Hb_002478_040 0.1649616567 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 2C, putative [Ricinus communis]
15 Hb_002686_150 0.1658241024 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
16 Hb_004117_170 0.1660248905 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
17 Hb_001484_020 0.1665071118 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
18 Hb_000156_090 0.1673461379 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 isoform X1 [Jatropha curcas]
19 Hb_159809_050 0.1676168714 - - AT14A, putative [Ricinus communis]
20 Hb_000684_100 0.1686912829 - - PREDICTED: cell number regulator 8 [Jatropha curcas]

Gene co-expression network

sample Hb_002897_100 Hb_002897_100 Hb_001085_300 Hb_001085_300 Hb_002897_100--Hb_001085_300 Hb_007253_010 Hb_007253_010 Hb_002897_100--Hb_007253_010 Hb_000152_760 Hb_000152_760 Hb_002897_100--Hb_000152_760 Hb_002107_100 Hb_002107_100 Hb_002897_100--Hb_002107_100 Hb_104920_010 Hb_104920_010 Hb_002897_100--Hb_104920_010 Hb_000421_230 Hb_000421_230 Hb_002897_100--Hb_000421_230 Hb_056196_060 Hb_056196_060 Hb_001085_300--Hb_056196_060 Hb_000272_110 Hb_000272_110 Hb_001085_300--Hb_000272_110 Hb_008112_010 Hb_008112_010 Hb_001085_300--Hb_008112_010 Hb_001318_150 Hb_001318_150 Hb_001085_300--Hb_001318_150 Hb_003018_030 Hb_003018_030 Hb_001085_300--Hb_003018_030 Hb_004837_220 Hb_004837_220 Hb_001085_300--Hb_004837_220 Hb_159809_050 Hb_159809_050 Hb_007253_010--Hb_159809_050 Hb_000749_070 Hb_000749_070 Hb_007253_010--Hb_000749_070 Hb_013358_020 Hb_013358_020 Hb_007253_010--Hb_013358_020 Hb_004117_170 Hb_004117_170 Hb_007253_010--Hb_004117_170 Hb_000035_050 Hb_000035_050 Hb_007253_010--Hb_000035_050 Hb_018790_050 Hb_018790_050 Hb_007253_010--Hb_018790_050 Hb_000152_150 Hb_000152_150 Hb_000152_760--Hb_000152_150 Hb_002478_040 Hb_002478_040 Hb_000152_760--Hb_002478_040 Hb_010368_080 Hb_010368_080 Hb_000152_760--Hb_010368_080 Hb_006132_040 Hb_006132_040 Hb_000152_760--Hb_006132_040 Hb_091226_010 Hb_091226_010 Hb_000152_760--Hb_091226_010 Hb_000979_060 Hb_000979_060 Hb_000152_760--Hb_000979_060 Hb_000796_120 Hb_000796_120 Hb_002107_100--Hb_000796_120 Hb_000270_700 Hb_000270_700 Hb_002107_100--Hb_000270_700 Hb_000418_050 Hb_000418_050 Hb_002107_100--Hb_000418_050 Hb_002107_100--Hb_104920_010 Hb_000034_110 Hb_000034_110 Hb_002107_100--Hb_000034_110 Hb_003428_090 Hb_003428_090 Hb_002107_100--Hb_003428_090 Hb_012799_150 Hb_012799_150 Hb_104920_010--Hb_012799_150 Hb_025787_010 Hb_025787_010 Hb_104920_010--Hb_025787_010 Hb_004117_270 Hb_004117_270 Hb_104920_010--Hb_004117_270 Hb_104920_010--Hb_000418_050 Hb_001369_030 Hb_001369_030 Hb_104920_010--Hb_001369_030 Hb_003581_280 Hb_003581_280 Hb_000421_230--Hb_003581_280 Hb_000045_260 Hb_000045_260 Hb_000421_230--Hb_000045_260 Hb_004125_060 Hb_004125_060 Hb_000421_230--Hb_004125_060 Hb_000638_280 Hb_000638_280 Hb_000421_230--Hb_000638_280 Hb_004108_240 Hb_004108_240 Hb_000421_230--Hb_004108_240 Hb_000925_030 Hb_000925_030 Hb_000421_230--Hb_000925_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.68048 25.1898 29.7581 12.0884 6.65398 1.87271
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.85424 3.53937 8.73131 8.62773 4.31046

CAGE analysis