Hb_000109_130

Information

Type -
Description -
Location Contig109: 220850-225343
Sequence    

Annotation

kegg
ID rcu:RCOM_0993370
description trehalose-6-phosphate synthase, putative (EC:2.4.1.15 3.1.3.12)
nr
ID XP_012092074.1
description PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 [Jatropha curcas]
swissprot
ID Q9LRA7
description Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 OS=Arabidopsis thaliana GN=TPS9 PE=2 SV=1
trembl
ID A0A067JEZ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21799 PE=4 SV=1
Gene Ontology
ID GO:0003825
description probable -trehalose-phosphate synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02715: 220893-225426
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000109_130 0.0 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 [Jatropha curcas]
2 Hb_000076_100 0.1301635806 - - PREDICTED: septum-promoting GTP-binding protein 1 [Jatropha curcas]
3 Hb_005488_120 0.1382613266 - - PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]
4 Hb_001246_160 0.1578213405 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
5 Hb_006545_020 0.1588740289 - - multicopper oxidase, putative [Ricinus communis]
6 Hb_004586_130 0.1594868404 - - conserved hypothetical protein [Ricinus communis]
7 Hb_010368_080 0.1626259015 - - PREDICTED: uncharacterized protein LOC105630287 [Jatropha curcas]
8 Hb_000272_110 0.1630272534 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
9 Hb_002876_070 0.1646583827 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
10 Hb_002151_130 0.1669132194 - - 12-oxophytodienoate reductase [Hevea brasiliensis]
11 Hb_005394_010 0.1688903655 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
12 Hb_001059_090 0.169148354 - - PREDICTED: F-box protein At1g61340 [Jatropha curcas]
13 Hb_000185_230 0.1709284904 - - WD-repeat protein, putative [Ricinus communis]
14 Hb_008020_020 0.179203217 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like isoform X1 [Jatropha curcas]
15 Hb_000152_760 0.1797160449 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002897_100 0.1800406408 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
17 Hb_047442_010 0.1820363226 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
18 Hb_012545_030 0.1831533307 - - Polyadenylate-binding protein RBP47C [Glycine soja]
19 Hb_000421_230 0.1833835322 - - retinal degeneration B beta, putative [Ricinus communis]
20 Hb_004837_220 0.1854218023 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000109_130 Hb_000109_130 Hb_000076_100 Hb_000076_100 Hb_000109_130--Hb_000076_100 Hb_005488_120 Hb_005488_120 Hb_000109_130--Hb_005488_120 Hb_001246_160 Hb_001246_160 Hb_000109_130--Hb_001246_160 Hb_006545_020 Hb_006545_020 Hb_000109_130--Hb_006545_020 Hb_004586_130 Hb_004586_130 Hb_000109_130--Hb_004586_130 Hb_010368_080 Hb_010368_080 Hb_000109_130--Hb_010368_080 Hb_015026_020 Hb_015026_020 Hb_000076_100--Hb_015026_020 Hb_124951_010 Hb_124951_010 Hb_000076_100--Hb_124951_010 Hb_000076_100--Hb_010368_080 Hb_000684_100 Hb_000684_100 Hb_000076_100--Hb_000684_100 Hb_000317_190 Hb_000317_190 Hb_000076_100--Hb_000317_190 Hb_000062_590 Hb_000062_590 Hb_005488_120--Hb_000062_590 Hb_000084_240 Hb_000084_240 Hb_005488_120--Hb_000084_240 Hb_005488_120--Hb_001246_160 Hb_000186_200 Hb_000186_200 Hb_005488_120--Hb_000186_200 Hb_002685_200 Hb_002685_200 Hb_005488_120--Hb_002685_200 Hb_000749_070 Hb_000749_070 Hb_001246_160--Hb_000749_070 Hb_000009_200 Hb_000009_200 Hb_001246_160--Hb_000009_200 Hb_005394_010 Hb_005394_010 Hb_001246_160--Hb_005394_010 Hb_002122_030 Hb_002122_030 Hb_001246_160--Hb_002122_030 Hb_018790_050 Hb_018790_050 Hb_001246_160--Hb_018790_050 Hb_056196_060 Hb_056196_060 Hb_001246_160--Hb_056196_060 Hb_002897_100 Hb_002897_100 Hb_006545_020--Hb_002897_100 Hb_000185_230 Hb_000185_230 Hb_006545_020--Hb_000185_230 Hb_004193_010 Hb_004193_010 Hb_006545_020--Hb_004193_010 Hb_001059_090 Hb_001059_090 Hb_006545_020--Hb_001059_090 Hb_000272_110 Hb_000272_110 Hb_006545_020--Hb_000272_110 Hb_000283_100 Hb_000283_100 Hb_004586_130--Hb_000283_100 Hb_002151_130 Hb_002151_130 Hb_004586_130--Hb_002151_130 Hb_010126_030 Hb_010126_030 Hb_004586_130--Hb_010126_030 Hb_000221_230 Hb_000221_230 Hb_004586_130--Hb_000221_230 Hb_002876_070 Hb_002876_070 Hb_004586_130--Hb_002876_070 Hb_001989_060 Hb_001989_060 Hb_004586_130--Hb_001989_060 Hb_012305_140 Hb_012305_140 Hb_010368_080--Hb_012305_140 Hb_001369_030 Hb_001369_030 Hb_010368_080--Hb_001369_030 Hb_004267_060 Hb_004267_060 Hb_010368_080--Hb_004267_060 Hb_004526_010 Hb_004526_010 Hb_010368_080--Hb_004526_010 Hb_000796_120 Hb_000796_120 Hb_010368_080--Hb_000796_120 Hb_004837_220 Hb_004837_220 Hb_010368_080--Hb_004837_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.25181 64.3907 68.1073 15.6772 10.4903 6.43347
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.82128 8.64097 9.92332 14.0412 4.16498

CAGE analysis