Hb_000840_070

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig840: 54732-58655
Sequence    

Annotation

kegg
ID rcu:RCOM_0009540
description leucine-rich repeat-containing protein, putative
nr
ID XP_002530072.1
description leucine-rich repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID B9SVQ3
description Leucine-rich repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0009540 PE=4 SV=1
Gene Ontology
ID GO:0043531
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60076: 54673-55498 , PASA_asmbl_60077: 55760-56524
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000840_070 0.0 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
2 Hb_004631_110 0.0850170188 - - ring finger protein, putative [Ricinus communis]
3 Hb_001195_350 0.1065003812 - - hypothetical protein JCGZ_04423 [Jatropha curcas]
4 Hb_002471_140 0.1233819815 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
5 Hb_001856_170 0.1302556701 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
6 Hb_000465_260 0.1311527196 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
7 Hb_000009_140 0.1321867546 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
8 Hb_004586_240 0.1336364296 - - PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
9 Hb_033363_010 0.1375425856 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
10 Hb_002781_010 0.1404548879 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
11 Hb_011689_100 0.1467799092 - - PREDICTED: uncharacterized protein LOC105631864 [Jatropha curcas]
12 Hb_002477_120 0.1469658345 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
13 Hb_005504_030 0.1496580019 - - PREDICTED: somatic embryogenesis receptor kinase 2-like [Pyrus x bretschneideri]
14 Hb_000059_130 0.1505909824 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
15 Hb_001085_300 0.153274844 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
16 Hb_008667_060 0.1537196533 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
17 Hb_000107_440 0.1544189404 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A synthase hydroxymethylglutaryl-CoA reductase [Hevea brasiliensis]
18 Hb_007007_080 0.1575405313 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001596_020 0.1581934753 - - hypothetical protein CICLE_v10014140mg [Citrus clementina]
20 Hb_006615_160 0.1589624394 - - PREDICTED: UDP-glycosyltransferase 89B1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000840_070 Hb_000840_070 Hb_004631_110 Hb_004631_110 Hb_000840_070--Hb_004631_110 Hb_001195_350 Hb_001195_350 Hb_000840_070--Hb_001195_350 Hb_002471_140 Hb_002471_140 Hb_000840_070--Hb_002471_140 Hb_001856_170 Hb_001856_170 Hb_000840_070--Hb_001856_170 Hb_000465_260 Hb_000465_260 Hb_000840_070--Hb_000465_260 Hb_000009_140 Hb_000009_140 Hb_000840_070--Hb_000009_140 Hb_004631_110--Hb_001195_350 Hb_004631_110--Hb_000465_260 Hb_001818_060 Hb_001818_060 Hb_004631_110--Hb_001818_060 Hb_158696_010 Hb_158696_010 Hb_004631_110--Hb_158696_010 Hb_000059_130 Hb_000059_130 Hb_004631_110--Hb_000059_130 Hb_000371_060 Hb_000371_060 Hb_001195_350--Hb_000371_060 Hb_010068_070 Hb_010068_070 Hb_001195_350--Hb_010068_070 Hb_033363_010 Hb_033363_010 Hb_001195_350--Hb_033363_010 Hb_002524_020 Hb_002524_020 Hb_001195_350--Hb_002524_020 Hb_000345_340 Hb_000345_340 Hb_002471_140--Hb_000345_340 Hb_008667_060 Hb_008667_060 Hb_002471_140--Hb_008667_060 Hb_002471_140--Hb_000059_130 Hb_000866_090 Hb_000866_090 Hb_002471_140--Hb_000866_090 Hb_001251_060 Hb_001251_060 Hb_002471_140--Hb_001251_060 Hb_002477_120 Hb_002477_120 Hb_002471_140--Hb_002477_120 Hb_000120_310 Hb_000120_310 Hb_001856_170--Hb_000120_310 Hb_004586_240 Hb_004586_240 Hb_001856_170--Hb_004586_240 Hb_001369_160 Hb_001369_160 Hb_001856_170--Hb_001369_160 Hb_006831_080 Hb_006831_080 Hb_001856_170--Hb_006831_080 Hb_001596_020 Hb_001596_020 Hb_001856_170--Hb_001596_020 Hb_001856_170--Hb_000009_140 Hb_009646_010 Hb_009646_010 Hb_000465_260--Hb_009646_010 Hb_000056_280 Hb_000056_280 Hb_000465_260--Hb_000056_280 Hb_000465_260--Hb_001818_060 Hb_000025_400 Hb_000025_400 Hb_000465_260--Hb_000025_400 Hb_000465_260--Hb_033363_010 Hb_005504_030 Hb_005504_030 Hb_000009_140--Hb_005504_030 Hb_000009_140--Hb_004586_240 Hb_000009_140--Hb_033363_010 Hb_000072_020 Hb_000072_020 Hb_000009_140--Hb_000072_020 Hb_000009_140--Hb_009646_010 Hb_000009_140--Hb_010068_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.82333 10.1889 4.8479 5.46518 0.402951 0.800622
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.857808 0.606568 0.919096 5.26147 1.29737

CAGE analysis