Hb_003371_120

Information

Type -
Description -
Location Contig3371: 79097-85160
Sequence    

Annotation

kegg
ID egr:104446988
description uncharacterized LOC104446988
nr
ID KDP20395.1
description hypothetical protein JCGZ_05278 [Jatropha curcas]
swissprot
ID Q39224
description Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1
trembl
ID A0A067JK56
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05278 PE=3 SV=1
Gene Ontology
ID GO:0016706
description protein srg1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35293: 80518-80991
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003371_120 0.0 - - hypothetical protein JCGZ_05278 [Jatropha curcas]
2 Hb_000997_110 0.1173751327 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
3 Hb_006026_010 0.1497629218 - - PREDICTED: cyclin-dependent kinase inhibitor 3-like [Jatropha curcas]
4 Hb_089920_010 0.170396575 - - PREDICTED: LOW QUALITY PROTEIN: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
5 Hb_005400_040 0.1851564229 - - PREDICTED: uncharacterized protein At4g04775-like [Jatropha curcas]
6 Hb_000538_190 0.1864878872 - - PREDICTED: protein DJ-1 homolog D [Jatropha curcas]
7 Hb_020178_060 0.1900766526 - - PREDICTED: nucleobase-ascorbate transporter 3 [Jatropha curcas]
8 Hb_005157_010 0.1920307115 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
9 Hb_044724_010 0.1928863619 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
10 Hb_003525_020 0.1931259613 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000010_350 0.1958816173 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
12 Hb_002273_050 0.1962855063 - - PREDICTED: geranylgeranyl diphosphate reductase, chloroplastic-like [Jatropha curcas]
13 Hb_002273_080 0.2040704297 - - geranylgeranyl reductase [Monoraphidium neglectum]
14 Hb_002686_280 0.2058996916 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
15 Hb_000160_240 0.2087658745 - - PREDICTED: uncharacterized protein At1g66480 [Jatropha curcas]
16 Hb_000215_410 0.2092423415 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
17 Hb_005147_040 0.2104473956 - - PREDICTED: uncharacterized protein LOC105629674 [Jatropha curcas]
18 Hb_004108_170 0.2121070731 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000976_290 0.2125749085 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105646228 [Jatropha curcas]
20 Hb_003849_260 0.2143608786 - - PREDICTED: uncharacterized protein LOC105644666 [Jatropha curcas]

Gene co-expression network

sample Hb_003371_120 Hb_003371_120 Hb_000997_110 Hb_000997_110 Hb_003371_120--Hb_000997_110 Hb_006026_010 Hb_006026_010 Hb_003371_120--Hb_006026_010 Hb_089920_010 Hb_089920_010 Hb_003371_120--Hb_089920_010 Hb_005400_040 Hb_005400_040 Hb_003371_120--Hb_005400_040 Hb_000538_190 Hb_000538_190 Hb_003371_120--Hb_000538_190 Hb_020178_060 Hb_020178_060 Hb_003371_120--Hb_020178_060 Hb_000997_110--Hb_005400_040 Hb_000010_350 Hb_000010_350 Hb_000997_110--Hb_000010_350 Hb_005147_040 Hb_005147_040 Hb_000997_110--Hb_005147_040 Hb_000976_290 Hb_000976_290 Hb_000997_110--Hb_000976_290 Hb_002918_150 Hb_002918_150 Hb_000997_110--Hb_002918_150 Hb_006026_010--Hb_000997_110 Hb_000160_240 Hb_000160_240 Hb_006026_010--Hb_000160_240 Hb_002273_050 Hb_002273_050 Hb_006026_010--Hb_002273_050 Hb_006026_010--Hb_000976_290 Hb_000120_970 Hb_000120_970 Hb_006026_010--Hb_000120_970 Hb_001951_030 Hb_001951_030 Hb_089920_010--Hb_001951_030 Hb_089920_010--Hb_000997_110 Hb_002273_080 Hb_002273_080 Hb_089920_010--Hb_002273_080 Hb_005157_010 Hb_005157_010 Hb_089920_010--Hb_005157_010 Hb_000215_410 Hb_000215_410 Hb_089920_010--Hb_000215_410 Hb_001863_150 Hb_001863_150 Hb_005400_040--Hb_001863_150 Hb_005288_020 Hb_005288_020 Hb_005400_040--Hb_005288_020 Hb_005539_020 Hb_005539_020 Hb_005400_040--Hb_005539_020 Hb_005400_040--Hb_005147_040 Hb_005400_040--Hb_000976_290 Hb_001369_770 Hb_001369_770 Hb_000538_190--Hb_001369_770 Hb_020178_050 Hb_020178_050 Hb_000538_190--Hb_020178_050 Hb_003525_020 Hb_003525_020 Hb_000538_190--Hb_003525_020 Hb_002942_110 Hb_002942_110 Hb_000538_190--Hb_002942_110 Hb_004976_060 Hb_004976_060 Hb_000538_190--Hb_004976_060 Hb_089100_040 Hb_089100_040 Hb_000538_190--Hb_089100_040 Hb_002903_130 Hb_002903_130 Hb_020178_060--Hb_002903_130 Hb_000283_150 Hb_000283_150 Hb_020178_060--Hb_000283_150 Hb_008948_160 Hb_008948_160 Hb_020178_060--Hb_008948_160 Hb_012565_080 Hb_012565_080 Hb_020178_060--Hb_012565_080 Hb_020178_060--Hb_000538_190 Hb_000521_170 Hb_000521_170 Hb_020178_060--Hb_000521_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.491939 3.38605 0.342553 0.400226 0.741728 0.259275
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.435293 0.208491 0.0283515 1.66847 0.0632161

CAGE analysis